Cargando…
Diurnal variation of the human adipose transcriptome and the link to metabolic disease
BACKGROUND: Circadian (diurnal) rhythm is an integral part of the physiology of the body; specifically, sleep, feeding behavior and metabolism are tightly linked to the light-dark cycle dictated by earth's rotation. METHODS: The present study examines the effect of diurnal rhythm on gene expres...
Autores principales: | , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2009
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647943/ https://www.ncbi.nlm.nih.gov/pubmed/19203388 http://dx.doi.org/10.1186/1755-8794-2-7 |
_version_ | 1782164954448658432 |
---|---|
author | Loboda, Andrey Kraft, Walter K Fine, Bernard Joseph, Jeffrey Nebozhyn, Michael Zhang, Chunsheng He, Yudong Yang, Xia Wright, Christopher Morris, Mark Chalikonda, Ira Ferguson, Mark Emilsson, Valur Leonardson, Amy Lamb, John Dai, Hongyue Schadt, Eric Greenberg, Howard E Lum, Pek Yee |
author_facet | Loboda, Andrey Kraft, Walter K Fine, Bernard Joseph, Jeffrey Nebozhyn, Michael Zhang, Chunsheng He, Yudong Yang, Xia Wright, Christopher Morris, Mark Chalikonda, Ira Ferguson, Mark Emilsson, Valur Leonardson, Amy Lamb, John Dai, Hongyue Schadt, Eric Greenberg, Howard E Lum, Pek Yee |
author_sort | Loboda, Andrey |
collection | PubMed |
description | BACKGROUND: Circadian (diurnal) rhythm is an integral part of the physiology of the body; specifically, sleep, feeding behavior and metabolism are tightly linked to the light-dark cycle dictated by earth's rotation. METHODS: The present study examines the effect of diurnal rhythm on gene expression in the subcutaneous adipose tissue of overweight to mildly obese, healthy individuals. In this well-controlled clinical study, adipose biopsies were taken in the morning, afternoon and evening from individuals in three study arms: treatment with the weight loss drug sibutramine/fasted, placebo/fed and placebo/fasted. RESULTS: The results indicated that diurnal rhythm was the most significant driver of gene expression variation in the human adipose tissue, with at least 25% of the genes having had significant changes in their expression levels during the course of the day. The mRNA expression levels of core clock genes at a specific time of day were consistent across multiple subjects on different days in all three arms, indicating robust diurnal regulation irrespective of potential confounding factors. The genes essential for energy metabolism and tissue physiology were part of the diurnal signature. We hypothesize that the diurnal transition of the expression of energy metabolism genes reflects the shift in the adipose tissue from an energy-expending state in the morning to an energy-storing state in the evening. Consistent with this hypothesis, the diurnal transition was delayed by fasting and treatment with sibutramine. Finally, an in silico comparison of the diurnal signature with data from the publicly-available Connectivity Map demonstrated a significant association with transcripts that were repressed by mTOR inhibitors, suggesting a possible link between mTOR signaling, diurnal gene expression and metabolic regulation. CONCLUSION: Diurnal rhythm plays an important role in the physiology and regulation of energy metabolism in the adipose tissue and should be considered in the selection of novel targets for the treatment of obesity and other metabolic disorders. |
format | Text |
id | pubmed-2647943 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-26479432009-02-26 Diurnal variation of the human adipose transcriptome and the link to metabolic disease Loboda, Andrey Kraft, Walter K Fine, Bernard Joseph, Jeffrey Nebozhyn, Michael Zhang, Chunsheng He, Yudong Yang, Xia Wright, Christopher Morris, Mark Chalikonda, Ira Ferguson, Mark Emilsson, Valur Leonardson, Amy Lamb, John Dai, Hongyue Schadt, Eric Greenberg, Howard E Lum, Pek Yee BMC Med Genomics Research Article BACKGROUND: Circadian (diurnal) rhythm is an integral part of the physiology of the body; specifically, sleep, feeding behavior and metabolism are tightly linked to the light-dark cycle dictated by earth's rotation. METHODS: The present study examines the effect of diurnal rhythm on gene expression in the subcutaneous adipose tissue of overweight to mildly obese, healthy individuals. In this well-controlled clinical study, adipose biopsies were taken in the morning, afternoon and evening from individuals in three study arms: treatment with the weight loss drug sibutramine/fasted, placebo/fed and placebo/fasted. RESULTS: The results indicated that diurnal rhythm was the most significant driver of gene expression variation in the human adipose tissue, with at least 25% of the genes having had significant changes in their expression levels during the course of the day. The mRNA expression levels of core clock genes at a specific time of day were consistent across multiple subjects on different days in all three arms, indicating robust diurnal regulation irrespective of potential confounding factors. The genes essential for energy metabolism and tissue physiology were part of the diurnal signature. We hypothesize that the diurnal transition of the expression of energy metabolism genes reflects the shift in the adipose tissue from an energy-expending state in the morning to an energy-storing state in the evening. Consistent with this hypothesis, the diurnal transition was delayed by fasting and treatment with sibutramine. Finally, an in silico comparison of the diurnal signature with data from the publicly-available Connectivity Map demonstrated a significant association with transcripts that were repressed by mTOR inhibitors, suggesting a possible link between mTOR signaling, diurnal gene expression and metabolic regulation. CONCLUSION: Diurnal rhythm plays an important role in the physiology and regulation of energy metabolism in the adipose tissue and should be considered in the selection of novel targets for the treatment of obesity and other metabolic disorders. BioMed Central 2009-02-09 /pmc/articles/PMC2647943/ /pubmed/19203388 http://dx.doi.org/10.1186/1755-8794-2-7 Text en Copyright © 2009 Loboda et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Loboda, Andrey Kraft, Walter K Fine, Bernard Joseph, Jeffrey Nebozhyn, Michael Zhang, Chunsheng He, Yudong Yang, Xia Wright, Christopher Morris, Mark Chalikonda, Ira Ferguson, Mark Emilsson, Valur Leonardson, Amy Lamb, John Dai, Hongyue Schadt, Eric Greenberg, Howard E Lum, Pek Yee Diurnal variation of the human adipose transcriptome and the link to metabolic disease |
title | Diurnal variation of the human adipose transcriptome and the link to metabolic disease |
title_full | Diurnal variation of the human adipose transcriptome and the link to metabolic disease |
title_fullStr | Diurnal variation of the human adipose transcriptome and the link to metabolic disease |
title_full_unstemmed | Diurnal variation of the human adipose transcriptome and the link to metabolic disease |
title_short | Diurnal variation of the human adipose transcriptome and the link to metabolic disease |
title_sort | diurnal variation of the human adipose transcriptome and the link to metabolic disease |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647943/ https://www.ncbi.nlm.nih.gov/pubmed/19203388 http://dx.doi.org/10.1186/1755-8794-2-7 |
work_keys_str_mv | AT lobodaandrey diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT kraftwalterk diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT finebernard diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT josephjeffrey diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT nebozhynmichael diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT zhangchunsheng diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT heyudong diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT yangxia diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT wrightchristopher diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT morrismark diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT chalikondaira diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT fergusonmark diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT emilssonvalur diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT leonardsonamy diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT lambjohn diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT daihongyue diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT schadteric diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT greenberghowarde diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease AT lumpekyee diurnalvariationofthehumanadiposetranscriptomeandthelinktometabolicdisease |