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Finding optimal threshold for correction error reads in DNA assembling

BACKGROUND: DNA assembling is the problem of determining the nucleotide sequence of a genome from its substrings, called reads. In the experiments, there may be some errors on the reads which affect the performance of the DNA assembly algorithms. Existing algorithms, e.g. ECINDEL and SRCorr, correct...

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Detalles Bibliográficos
Autores principales: Chin, Francis YL, Leung, Henry CM, Li, Wei-Lin, Yiu, Siu-Ming
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648749/
https://www.ncbi.nlm.nih.gov/pubmed/19208114
http://dx.doi.org/10.1186/1471-2105-10-S1-S15