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Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles

Robustness of organisms is widely observed although difficult to precisely characterize. Performance can remain nearly constant within some neighborhood of the normal operating regime, leading to homeostasis, but then abruptly break down with pathological consequences beyond this neighborhood. Curre...

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Detalles Bibliográficos
Autores principales: Coelho, Pedro M. B. M., Salvador, Armindo, Savageau, Michael A.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650413/
https://www.ncbi.nlm.nih.gov/pubmed/19300483
http://dx.doi.org/10.1371/journal.pcbi.1000319
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author Coelho, Pedro M. B. M.
Salvador, Armindo
Savageau, Michael A.
author_facet Coelho, Pedro M. B. M.
Salvador, Armindo
Savageau, Michael A.
author_sort Coelho, Pedro M. B. M.
collection PubMed
description Robustness of organisms is widely observed although difficult to precisely characterize. Performance can remain nearly constant within some neighborhood of the normal operating regime, leading to homeostasis, but then abruptly break down with pathological consequences beyond this neighborhood. Currently, there is no generic approach to identifying boundaries where local performance deteriorates abruptly, and this has hampered understanding of the molecular basis of biological robustness. Here we introduce a generic approach for characterizing boundaries between operational regimes based on the piecewise power-law representation of the system's components. This conceptual framework allows us to define “global tolerance” as the ratio between the normal value of a parameter and the value at such a boundary. We illustrate the utility of this concept for a class of moiety-transfer cycles, which is a widespread module in biology. Our results show a region of “best” local performance surrounded by “poor” regions; also, selection for improved local performance often pushes the operating values away from regime boundaries, thus increasing global tolerance. These predictions agree with experimental data from the reduced nicotinamide adenine dinucleotide phosphate (NADPH) redox cycle of human erythrocytes.
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spelling pubmed-26504132009-03-20 Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles Coelho, Pedro M. B. M. Salvador, Armindo Savageau, Michael A. PLoS Comput Biol Research Article Robustness of organisms is widely observed although difficult to precisely characterize. Performance can remain nearly constant within some neighborhood of the normal operating regime, leading to homeostasis, but then abruptly break down with pathological consequences beyond this neighborhood. Currently, there is no generic approach to identifying boundaries where local performance deteriorates abruptly, and this has hampered understanding of the molecular basis of biological robustness. Here we introduce a generic approach for characterizing boundaries between operational regimes based on the piecewise power-law representation of the system's components. This conceptual framework allows us to define “global tolerance” as the ratio between the normal value of a parameter and the value at such a boundary. We illustrate the utility of this concept for a class of moiety-transfer cycles, which is a widespread module in biology. Our results show a region of “best” local performance surrounded by “poor” regions; also, selection for improved local performance often pushes the operating values away from regime boundaries, thus increasing global tolerance. These predictions agree with experimental data from the reduced nicotinamide adenine dinucleotide phosphate (NADPH) redox cycle of human erythrocytes. Public Library of Science 2009-03-20 /pmc/articles/PMC2650413/ /pubmed/19300483 http://dx.doi.org/10.1371/journal.pcbi.1000319 Text en Coelho et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Coelho, Pedro M. B. M.
Salvador, Armindo
Savageau, Michael A.
Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles
title Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles
title_full Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles
title_fullStr Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles
title_full_unstemmed Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles
title_short Quantifying Global Tolerance of Biochemical Systems: Design Implications for Moiety-Transfer Cycles
title_sort quantifying global tolerance of biochemical systems: design implications for moiety-transfer cycles
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650413/
https://www.ncbi.nlm.nih.gov/pubmed/19300483
http://dx.doi.org/10.1371/journal.pcbi.1000319
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