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Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome

Revolver discovered in the Triticeae plant is a novel class of transposon-like gene and a major component of the large cereal genome. An 89 bp segment of Revolver that is enriched in the genome of rye was isolated by deleting the DNA sequences common to rye and wheat. The entire structure of Revolve...

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Autores principales: Tomita, Motonori, Shinohara, Kasumi, Morimoto, Mayu
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650628/
https://www.ncbi.nlm.nih.gov/pubmed/18303044
http://dx.doi.org/10.1093/dnares/dsm029
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author Tomita, Motonori
Shinohara, Kasumi
Morimoto, Mayu
author_facet Tomita, Motonori
Shinohara, Kasumi
Morimoto, Mayu
author_sort Tomita, Motonori
collection PubMed
description Revolver discovered in the Triticeae plant is a novel class of transposon-like gene and a major component of the large cereal genome. An 89 bp segment of Revolver that is enriched in the genome of rye was isolated by deleting the DNA sequences common to rye and wheat. The entire structure of Revolver was determined by using rye genomic clones, which were screened by the 89 bp probe. Revolver consists of 2929—3041 bp with an inverted repeated sequence on each end and is dispersed through all seven chromosomes of the rye genome. Revolver is transcriptionally active, and the isolated full-length cDNA (726 bp) reveals that Revolver harbors a single gene consisting of three exons (342, 88, and 296 bp) and two introns (750 and 1237 bp), and encodes 139 amino acid residues of protein, which shows similarity to some transcriptional regulators. Revolver variants ranging from 2665 to 4269 bp, in which 5′ regions were destructed, indicate structural diversities around the first exon. Revolver does not share identity with any known class I or class II autonomous transposable elements of any living species. DNA blot analysis of Triticeae plants shows that Revolver has existed since the diploid progenitor of wheat, and has been amplified or lost in several species during the evolution of the Triticeae.
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spelling pubmed-26506282009-04-13 Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome Tomita, Motonori Shinohara, Kasumi Morimoto, Mayu DNA Res Full Papers Revolver discovered in the Triticeae plant is a novel class of transposon-like gene and a major component of the large cereal genome. An 89 bp segment of Revolver that is enriched in the genome of rye was isolated by deleting the DNA sequences common to rye and wheat. The entire structure of Revolver was determined by using rye genomic clones, which were screened by the 89 bp probe. Revolver consists of 2929—3041 bp with an inverted repeated sequence on each end and is dispersed through all seven chromosomes of the rye genome. Revolver is transcriptionally active, and the isolated full-length cDNA (726 bp) reveals that Revolver harbors a single gene consisting of three exons (342, 88, and 296 bp) and two introns (750 and 1237 bp), and encodes 139 amino acid residues of protein, which shows similarity to some transcriptional regulators. Revolver variants ranging from 2665 to 4269 bp, in which 5′ regions were destructed, indicate structural diversities around the first exon. Revolver does not share identity with any known class I or class II autonomous transposable elements of any living species. DNA blot analysis of Triticeae plants shows that Revolver has existed since the diploid progenitor of wheat, and has been amplified or lost in several species during the evolution of the Triticeae. Oxford University Press 2008-02 /pmc/articles/PMC2650628/ /pubmed/18303044 http://dx.doi.org/10.1093/dnares/dsm029 Text en © The Author 2008. Kazusa DNA Research Institute
spellingShingle Full Papers
Tomita, Motonori
Shinohara, Kasumi
Morimoto, Mayu
Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome
title Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome
title_full Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome
title_fullStr Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome
title_full_unstemmed Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome
title_short Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome
title_sort revolver is a new class of transposon-like gene composing the triticeae genome
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650628/
https://www.ncbi.nlm.nih.gov/pubmed/18303044
http://dx.doi.org/10.1093/dnares/dsm029
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