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A Parsimonious Approach to Modeling Animal Movement Data

Animal tracking is a growing field in ecology and previous work has shown that simple speed filtering of tracking data is not sufficient and that improvement of tracking location estimates are possible. To date, this has required methods that are complicated and often time-consuming (state-space mod...

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Autores principales: Tremblay, Yann, Robinson, Patrick W., Costa, Daniel P.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650804/
https://www.ncbi.nlm.nih.gov/pubmed/19262755
http://dx.doi.org/10.1371/journal.pone.0004711
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author Tremblay, Yann
Robinson, Patrick W.
Costa, Daniel P.
author_facet Tremblay, Yann
Robinson, Patrick W.
Costa, Daniel P.
author_sort Tremblay, Yann
collection PubMed
description Animal tracking is a growing field in ecology and previous work has shown that simple speed filtering of tracking data is not sufficient and that improvement of tracking location estimates are possible. To date, this has required methods that are complicated and often time-consuming (state-space models), resulting in limited application of this technique and the potential for analysis errors due to poor understanding of the fundamental framework behind the approach. We describe and test an alternative and intuitive approach consisting of bootstrapping random walks biased by forward particles. The model uses recorded data accuracy estimates, and can assimilate other sources of data such as sea-surface temperature, bathymetry and/or physical boundaries. We tested our model using ARGOS and geolocation tracks of elephant seals that also carried GPS tags in addition to PTTs, enabling true validation. Among pinnipeds, elephant seals are extreme divers that spend little time at the surface, which considerably impact the quality of both ARGOS and light-based geolocation tracks. Despite such low overall quality tracks, our model provided location estimates within 4.0, 5.5 and 12.0 km of true location 50% of the time, and within 9, 10.5 and 20.0 km 90% of the time, for above, equal or below average elephant seal ARGOS track qualities, respectively. With geolocation data, 50% of errors were less than 104.8 km (<0.94°), and 90% were less than 199.8 km (<1.80°). Larger errors were due to lack of sea-surface temperature gradients. In addition we show that our model is flexible enough to solve the obstacle avoidance problem by assimilating high resolution coastline data. This reduced the number of invalid on-land location by almost an order of magnitude. The method is intuitive, flexible and efficient, promising extensive utilization in future research.
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spelling pubmed-26508042009-03-05 A Parsimonious Approach to Modeling Animal Movement Data Tremblay, Yann Robinson, Patrick W. Costa, Daniel P. PLoS One Research Article Animal tracking is a growing field in ecology and previous work has shown that simple speed filtering of tracking data is not sufficient and that improvement of tracking location estimates are possible. To date, this has required methods that are complicated and often time-consuming (state-space models), resulting in limited application of this technique and the potential for analysis errors due to poor understanding of the fundamental framework behind the approach. We describe and test an alternative and intuitive approach consisting of bootstrapping random walks biased by forward particles. The model uses recorded data accuracy estimates, and can assimilate other sources of data such as sea-surface temperature, bathymetry and/or physical boundaries. We tested our model using ARGOS and geolocation tracks of elephant seals that also carried GPS tags in addition to PTTs, enabling true validation. Among pinnipeds, elephant seals are extreme divers that spend little time at the surface, which considerably impact the quality of both ARGOS and light-based geolocation tracks. Despite such low overall quality tracks, our model provided location estimates within 4.0, 5.5 and 12.0 km of true location 50% of the time, and within 9, 10.5 and 20.0 km 90% of the time, for above, equal or below average elephant seal ARGOS track qualities, respectively. With geolocation data, 50% of errors were less than 104.8 km (<0.94°), and 90% were less than 199.8 km (<1.80°). Larger errors were due to lack of sea-surface temperature gradients. In addition we show that our model is flexible enough to solve the obstacle avoidance problem by assimilating high resolution coastline data. This reduced the number of invalid on-land location by almost an order of magnitude. The method is intuitive, flexible and efficient, promising extensive utilization in future research. Public Library of Science 2009-03-05 /pmc/articles/PMC2650804/ /pubmed/19262755 http://dx.doi.org/10.1371/journal.pone.0004711 Text en Tremblay et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Tremblay, Yann
Robinson, Patrick W.
Costa, Daniel P.
A Parsimonious Approach to Modeling Animal Movement Data
title A Parsimonious Approach to Modeling Animal Movement Data
title_full A Parsimonious Approach to Modeling Animal Movement Data
title_fullStr A Parsimonious Approach to Modeling Animal Movement Data
title_full_unstemmed A Parsimonious Approach to Modeling Animal Movement Data
title_short A Parsimonious Approach to Modeling Animal Movement Data
title_sort parsimonious approach to modeling animal movement data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2650804/
https://www.ncbi.nlm.nih.gov/pubmed/19262755
http://dx.doi.org/10.1371/journal.pone.0004711
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