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Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies
The SM8 quantum mechanical aqueous continuum solvation model is applied to a 17-molecule test set proposed by Nicholls et al. (J. Med. Chem.2008, 51, 769) to predict free energies of solvation. With the M06-2X density functional, the 6-31G(d) basis set, and CM4M charge model, the root-mean-square er...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
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American Chemical Society
2008
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652251/ https://www.ncbi.nlm.nih.gov/pubmed/18582013 http://dx.doi.org/10.1021/jp8028038 |
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author | Chamberlin, Adam C. Cramer, Christopher J. Truhlar, Donald G. |
author_facet | Chamberlin, Adam C. Cramer, Christopher J. Truhlar, Donald G. |
author_sort | Chamberlin, Adam C. |
collection | PubMed |
description | The SM8 quantum mechanical aqueous continuum solvation model is applied to a 17-molecule test set proposed by Nicholls et al. (J. Med. Chem.2008, 51, 769) to predict free energies of solvation. With the M06-2X density functional, the 6-31G(d) basis set, and CM4M charge model, the root-mean-square error (RMSE) of SM8 is 1.08 kcal mol(−1) for aqueous geometries and 1.14 kcal mol(−1) for gas-phase geometries. These errors compare favorably with optimal explicit and continuum models reported by Nicholls et al., having RMSEs of 1.33 and 1.87 kcal mol(−1), respectively. Other models examined by these workers had RMSEs of 1.5−2.6 kcal mol(−1). We also explore the use of other density functionals and charge models with SM8 and the RMSE increases to 1.21 kcal mol(−1) for mPW1/CM4 with gas-phase geometries, to 1.50 kcal mol(−1) for M06-2X/CM4 with gas-phase geometries, and to 1.27−1.64 kcal mol(−1) with three different models at B3LYP gas-phase geometries. |
format | Text |
id | pubmed-2652251 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-26522512009-03-20 Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies Chamberlin, Adam C. Cramer, Christopher J. Truhlar, Donald G. J Phys Chem B The SM8 quantum mechanical aqueous continuum solvation model is applied to a 17-molecule test set proposed by Nicholls et al. (J. Med. Chem.2008, 51, 769) to predict free energies of solvation. With the M06-2X density functional, the 6-31G(d) basis set, and CM4M charge model, the root-mean-square error (RMSE) of SM8 is 1.08 kcal mol(−1) for aqueous geometries and 1.14 kcal mol(−1) for gas-phase geometries. These errors compare favorably with optimal explicit and continuum models reported by Nicholls et al., having RMSEs of 1.33 and 1.87 kcal mol(−1), respectively. Other models examined by these workers had RMSEs of 1.5−2.6 kcal mol(−1). We also explore the use of other density functionals and charge models with SM8 and the RMSE increases to 1.21 kcal mol(−1) for mPW1/CM4 with gas-phase geometries, to 1.50 kcal mol(−1) for M06-2X/CM4 with gas-phase geometries, and to 1.27−1.64 kcal mol(−1) with three different models at B3LYP gas-phase geometries. American Chemical Society 2008-06-26 2008-07-24 /pmc/articles/PMC2652251/ /pubmed/18582013 http://dx.doi.org/10.1021/jp8028038 Text en Copyright © 2008 American Chemical Society http://pubs.acs.org This is an open-access article distributed under the ACS AuthorChoice Terms & Conditions. Any use of this article, must conform to the terms of that license which are available at http://pubs.acs.org. 40.75 |
spellingShingle | Chamberlin, Adam C. Cramer, Christopher J. Truhlar, Donald G. Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies |
title | Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies |
title_full | Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies |
title_fullStr | Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies |
title_full_unstemmed | Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies |
title_short | Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies |
title_sort | performance of sm8 on a test to predict small-molecule solvation free energies |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652251/ https://www.ncbi.nlm.nih.gov/pubmed/18582013 http://dx.doi.org/10.1021/jp8028038 |
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