Cargando…

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis

Summary:SciMiner is a web-based literature mining and functional analysis tool that identifies genes and proteins using a context specific analysis of MEDLINE abstracts and full texts. SciMiner accepts a free text query (PubMed Entrez search) or a list of PubMed identifiers as input. SciMiner uses b...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hur, Junguk, Schuyler, Adam D., States, David J., Feldman, Eva L.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2009
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654801/ https://www.ncbi.nlm.nih.gov/pubmed/19188191 http://dx.doi.org/10.1093/bioinformatics/btp049

Ejemplares similares

MamPhEA: a web tool for mammalian phenotype enrichment analysis
por: Weng, Meng-Pin, et al.
Publicado: (2010)

Online bias-aware disease module mining with ROBUST-Web
por: Sarkar, Suryadipto, et al.
Publicado: (2023)

Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions
por: Zakrzewski, Martha, et al.
Publicado: (2017)

PEMT: a patent enrichment tool for drug discovery
por: Gadiya, Yojana, et al.
Publicado: (2022)

U-Compare: share and compare text mining tools with UIMA
por: Kano, Yoshinobu, et al.
Publicado: (2009)

TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining
por: Huang, Zhi, et al.
Publicado: (2021)

MiSearch adaptive pubMed search tool
por: States, David J., et al.
Publicado: (2009)

BioCaster: detecting public health rumors with a Web-based text mining system
por: Collier, Nigel, et al.
Publicado: (2008)

Literature-based discovery of diabetes- and ROS-related targets
por: Hur, Junguk, et al.
Publicado: (2010)

Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
por: Domingo-Fernández, Daniel, et al.
Publicado: (2017)

LipiDisease: associate lipids to diseases using literature mining
por: More, Piyush, et al.
Publicado: (2021)

CoDe: a web-based tool for codon deoptimization
por: Sharma, Divya, et al.
Publicado: (2023)

ProteomeExpert: a Docker image-based web server for exploring, modeling, visualizing and mining quantitative proteomic datasets
por: Zhu, Tiansheng, et al.
Publicado: (2021)

QuickGO: a web-based tool for Gene Ontology searching
por: Binns, David, et al.
Publicado: (2009)

INVEX—a web-based tool for integrative visualization of expression data
por: Xia, Jianguo, et al.
Publicado: (2013)

EpiToolKit—a web-based workbench for vaccine design
por: Schubert, Benjamin, et al.
Publicado: (2015)

BEAM web server: a tool for structural RNA motif discovery
por: Pietrosanto, Marco, et al.
Publicado: (2018)

CytoGPS: a web-enabled karyotype analysis tool for cytogenetics
por: Abrams, Zachary B, et al.
Publicado: (2019)

SciApps: a cloud-based platform for reproducible bioinformatics workflows
por: Wang, Liya, et al.
Publicado: (2018)

WAVES (Web-based tool for Analysis and Visualization of Environmental Samples)—a web application for visualization of wastewater pathogen sequencing results
por: Triska, Petr, et al.
Publicado: (2023)

CNVineta: a data mining tool for large case–control copy number variation datasets
por: Wittig, Michael, et al.
Publicado: (2010)

Boulder ALignment Editor (ALE): a web-based RNA alignment tool
por: Stombaugh, Jesse, et al.
Publicado: (2011)

CPSP-web-tools: a server for 3D lattice protein studies
por: Mann, Martin, et al.
Publicado: (2009)

PanCGHweb: a web tool for genotype calling in pangenome CGH data
por: Bayjanov, Jumamurat R., et al.
Publicado: (2010)

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
por: García-Alcalde, Fernando, et al.
Publicado: (2011)

ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation
por: Barenboim, Maxim, et al.
Publicado: (2013)

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models
por: Gangavarapu, Karthik, et al.
Publicado: (2016)

Protein–Sol: a web tool for predicting protein solubility from sequence
por: Hebditch, Max, et al.
Publicado: (2017)

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes
por: Jiménez-García, Brian, et al.
Publicado: (2019)

NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
por: Koutrouli, Mikaela, et al.
Publicado: (2022)

AOP4EUpest: mapping of pesticides in adverse outcome pathways using a text mining tool
por: Jornod, Florence, et al.
Publicado: (2020)

Graphical data mining of cancer mechanisms with SEMA
por: Solmaz, Mustafa, et al.
Publicado: (2019)

The Chemical Translation Service—a web-based tool to improve standardization of metabolomic reports
por: Wohlgemuth, Gert, et al.
Publicado: (2010)

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments
por: Georgakopoulos-Soares, Ilias, et al.
Publicado: (2017)

SLIDE – a web-based tool for interactive visualization of large-scale – omics data
por: Ghosh, Soumita, et al.
Publicado: (2019)

G4Killer web application: a tool to design G-quadruplex mutations
por: Brazda, Vaclav, et al.
Publicado: (2020)

InterMineR: an R package for InterMine databases
por: Kyritsis, Konstantinos A, et al.
Publicado: (2019)

SciBabel: a system for crowd-sourced validation of automatic translations of scientific texts
por: Soares, Felipe, et al.
Publicado: (2020)

Canto: an online tool for community literature curation
por: Rutherford, Kim M., et al.
Publicado: (2014)

SECISaln, a web-based tool for the creation of structure-based alignments of eukaryotic SECIS elements
por: Chapple, Charles E., et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_c60r1g4n7aa1iron537f9k5lka