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CHPVDB ‐ a sequence annotation database for Chandipura Virus
Databases containing proteomic information have become indispensable for virology studies. As the gap between the amount of sequence information and functional characterization widens, increasing efforts are being directed to the development of databases. For virologist, it is therefore desirable to...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics Publishing Group
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655048/ https://www.ncbi.nlm.nih.gov/pubmed/19293996 |
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author | Dikhit, Manas Ranjan Rana, Sindhu Prava Das, Pradeep Sahoo, Ganesh Chandra |
author_facet | Dikhit, Manas Ranjan Rana, Sindhu Prava Das, Pradeep Sahoo, Ganesh Chandra |
author_sort | Dikhit, Manas Ranjan |
collection | PubMed |
description | Databases containing proteomic information have become indispensable for virology studies. As the gap between the amount of sequence information and functional characterization widens, increasing efforts are being directed to the development of databases. For virologist, it is therefore desirable to have a single data collection point which integrates research related data from different domains. CHPVDB is our effort to provide virologist such a one‐step information center. We describe herein the creation of CHPVDB, a new database that integrates information of different proteins in to a single resource. For basic curation of protein information, the database relies on features from other selected databases, servers and published reports. This database facilitates significant relationship between molecular analysis, cleavage sites, possible protein functional families assigned to different proteins of Chandipura virus (CHPV) by SVMProt and related tools. AVAILABILITY: The database is freely available at http://chpvdb.biomedinformri.org/. |
format | Text |
id | pubmed-2655048 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Biomedical Informatics Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-26550482009-03-17 CHPVDB ‐ a sequence annotation database for Chandipura Virus Dikhit, Manas Ranjan Rana, Sindhu Prava Das, Pradeep Sahoo, Ganesh Chandra Bioinformation Database Databases containing proteomic information have become indispensable for virology studies. As the gap between the amount of sequence information and functional characterization widens, increasing efforts are being directed to the development of databases. For virologist, it is therefore desirable to have a single data collection point which integrates research related data from different domains. CHPVDB is our effort to provide virologist such a one‐step information center. We describe herein the creation of CHPVDB, a new database that integrates information of different proteins in to a single resource. For basic curation of protein information, the database relies on features from other selected databases, servers and published reports. This database facilitates significant relationship between molecular analysis, cleavage sites, possible protein functional families assigned to different proteins of Chandipura virus (CHPV) by SVMProt and related tools. AVAILABILITY: The database is freely available at http://chpvdb.biomedinformri.org/. Biomedical Informatics Publishing Group 2009-02-28 /pmc/articles/PMC2655048/ /pubmed/19293996 Text en © 2009 Biomedical Informatics Publishing Group This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Database Dikhit, Manas Ranjan Rana, Sindhu Prava Das, Pradeep Sahoo, Ganesh Chandra CHPVDB ‐ a sequence annotation database for Chandipura Virus |
title | CHPVDB ‐ a sequence annotation database for Chandipura Virus |
title_full | CHPVDB ‐ a sequence annotation database for Chandipura Virus |
title_fullStr | CHPVDB ‐ a sequence annotation database for Chandipura Virus |
title_full_unstemmed | CHPVDB ‐ a sequence annotation database for Chandipura Virus |
title_short | CHPVDB ‐ a sequence annotation database for Chandipura Virus |
title_sort | chpvdb ‐ a sequence annotation database for chandipura virus |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655048/ https://www.ncbi.nlm.nih.gov/pubmed/19293996 |
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