MySSP: Non-stationary evolutionary sequence simulation, including indels

MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of th...

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Detalles Bibliográficos
Autor principal: Rosenberg, Michael S.
Formato: Texto
Lenguaje:English
Publicado: Libertas Academica 2007
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2658873/
https://www.ncbi.nlm.nih.gov/pubmed/19325855
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author Rosenberg, Michael S.
author_facet Rosenberg, Michael S.
author_sort Rosenberg, Michael S.
collection PubMed
description MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package.
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spelling pubmed-26588732009-03-25 MySSP: Non-stationary evolutionary sequence simulation, including indels Rosenberg, Michael S. Evol Bioinform Online Application Note MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package. Libertas Academica 2007-02-26 /pmc/articles/PMC2658873/ /pubmed/19325855 Text en Copyright © 2005 The authors. http://creativecommons.org/licenses/by/3.0 This article is published under the Creative Commons Attribution By licence. For further information go to: http://creativecommons.org/licenses/by/3.0. (http://creativecommons.org/licenses/by/3.0)
spellingShingle Application Note
Rosenberg, Michael S.
MySSP: Non-stationary evolutionary sequence simulation, including indels
title MySSP: Non-stationary evolutionary sequence simulation, including indels
title_full MySSP: Non-stationary evolutionary sequence simulation, including indels
title_fullStr MySSP: Non-stationary evolutionary sequence simulation, including indels
title_full_unstemmed MySSP: Non-stationary evolutionary sequence simulation, including indels
title_short MySSP: Non-stationary evolutionary sequence simulation, including indels
title_sort myssp: non-stationary evolutionary sequence simulation, including indels
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2658873/
https://www.ncbi.nlm.nih.gov/pubmed/19325855
work_keys_str_mv AT rosenbergmichaels mysspnonstationaryevolutionarysequencesimulationincludingindels

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