DIYA: a bacterial annotation pipeline for any genomics lab

Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shot...

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Detalles Bibliográficos
Autores principales: Stewart, Andrew C., Osborne, Brian, Read, Timothy D.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660880/
https://www.ncbi.nlm.nih.gov/pubmed/19254921
http://dx.doi.org/10.1093/bioinformatics/btp097
Descripción
Sumario:Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output. Availability: Distribution and source code are available at (https://sourceforge.net/projects/diyg/). Contact: tread@emory.edu Supplementary information: Supplementary data are available at Bioinformatics online.

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