DIYA: a bacterial annotation pipeline for any genomics lab

Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shot...

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Detalles Bibliográficos
Autores principales: Stewart, Andrew C., Osborne, Brian, Read, Timothy D.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660880/
https://www.ncbi.nlm.nih.gov/pubmed/19254921
http://dx.doi.org/10.1093/bioinformatics/btp097
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author Stewart, Andrew C.
Osborne, Brian
Read, Timothy D.
author_facet Stewart, Andrew C.
Osborne, Brian
Read, Timothy D.
author_sort Stewart, Andrew C.
collection PubMed
description Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output. Availability: Distribution and source code are available at (https://sourceforge.net/projects/diyg/). Contact: tread@emory.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-26608802009-04-02 DIYA: a bacterial annotation pipeline for any genomics lab Stewart, Andrew C. Osborne, Brian Read, Timothy D. Bioinformatics Applications Note Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output. Availability: Distribution and source code are available at (https://sourceforge.net/projects/diyg/). Contact: tread@emory.edu Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2009-04-01 2009-03-02 /pmc/articles/PMC2660880/ /pubmed/19254921 http://dx.doi.org/10.1093/bioinformatics/btp097 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Stewart, Andrew C.
Osborne, Brian
Read, Timothy D.
DIYA: a bacterial annotation pipeline for any genomics lab
title DIYA: a bacterial annotation pipeline for any genomics lab
title_full DIYA: a bacterial annotation pipeline for any genomics lab
title_fullStr DIYA: a bacterial annotation pipeline for any genomics lab
title_full_unstemmed DIYA: a bacterial annotation pipeline for any genomics lab
title_short DIYA: a bacterial annotation pipeline for any genomics lab
title_sort diya: a bacterial annotation pipeline for any genomics lab
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660880/
https://www.ncbi.nlm.nih.gov/pubmed/19254921
http://dx.doi.org/10.1093/bioinformatics/btp097
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