Cargando…

Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

BACKGROUND: Retroviral LTRs, paired or single, influence the transcription of both retroviral and non-retroviral genomic sequences. Vertebrate genomes contain many thousand endogenous retroviruses (ERVs) and their LTRs. Single LTRs are difficult to detect from genomic sequences without recourse to r...

Descripción completa

Detalles Bibliográficos
Autores principales:	Benachenhou, Farid, Jern, Patric, Oja, Merja, Sperber, Göran, Blikstad, Vidar, Somervuo, Panu, Kaski, Samuel, Blomberg, Jonas
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2009
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2664473/ https://www.ncbi.nlm.nih.gov/pubmed/19365549 http://dx.doi.org/10.1371/journal.pone.0005179

Ejemplares similares

LTRs; Universal structure, detection and phylogeny
por: Benachenhou, Farid, et al.
Publicado: (2009)

Conserved structure and inferred evolutionary history of long terminal repeats (LTRs)
por: Benachenhou, Farid, et al.
Publicado: (2013)

Systematic Perturbation of Thousands of Retroviral LTRs in Mouse Embryos
por: Yang, Jian, et al.
Publicado: (2023)

Epigenetic modifications of HIV proviral LTRs: potential targets for cure
por: Doerfler, W, et al.
Publicado: (2012)

Epigenetic Control of Human Endogenous Retrovirus Expression: Focus on Regulation of Long-Terminal Repeats (LTRs)
por: Hurst, Tara P., et al.
Publicado: (2017)

LTRs of Endogenous Retroviruses as a Source of Tbx6 Binding Sites
por: Yasuhiko, Yukuto, et al.
Publicado: (2017)

Evidence for the existence of pathogenicity determinants in the Long Terminal Repeats (LTRs) of the Bovine Leukemia Virus (BLV) genome
por: Rodríguez, Sabrina M, et al.
Publicado: (2011)

Role of Human Endogenous Retroviral Long Terminal Repeats (LTRs) in Maintaining the Integrity of the Human Germ Line
por: Liu, Meihong, et al.
Publicado: (2011)

LTRs activated by Epstein-Barr virus–induced transformation of B cells alter the transcriptome
por: Leung, Amy, et al.
Publicado: (2018)

Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation
por: Fuentes, Daniel R, et al.
Publicado: (2018)

Comparative Methylation of ERVWE1/Syncytin-1 and Other Human Endogenous Retrovirus LTRs in Placenta Tissues
por: Gimenez, Juliette, et al.
Publicado: (2009)

Enhancing Double-Beam Laser Tweezers Raman Spectroscopy (LTRS) for the Photochemical Study of Individual Airborne Microdroplets
por: Gómez Castaño, Jovanny A., et al.
Publicado: (2019)

37: Incidence of Upper and Lower Airway Viral Infections in a Cohort of Lung Transplant Recipients (LTRs)
por: Bini, F., et al.
Publicado: (2008)

The First Sequenced Carnivore Genome Shows Complex Host-Endogenous Retrovirus Relationships
por: Martínez Barrio, Álvaro, et al.
Publicado: (2011)

Impact of Viral Activators and Epigenetic Regulators on HIV-1 LTRs Containing Naturally Occurring Single Nucleotide Polymorphisms
por: Shah, Sonia, et al.
Publicado: (2015)

Activation of LTRs from Different Human Endogenous Retrovirus (HERV) Families by the HTLV-1 Tax Protein and T-Cell Activators
por: Toufaily, Chirine, et al.
Publicado: (2011)

Gene looping between the viral LTRs is a hallmark of transcriptionally active HIV-1 and Mo-MLV proviral DNA
por: Vardabasso, Chiara, et al.
Publicado: (2009)

A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response
por: Bousios, Alexandros, et al.
Publicado: (2016)

Human Endogenous Retroviruses (HERVs) and Mammalian Apparent LTRs Retrotransposons (MaLRs) Are Dynamically Modulated in Different Stages of Immunity
por: Pisano, Maria Paola, et al.
Publicado: (2021)

The largest HIV-1-infected T cell clones in children on long-term combination antiretroviral therapy contain solo LTRs
por: Botha, Johannes C., et al.
Publicado: (2023)

Amplification of LTRs of extrachromosomal linear DNAs (ALE-seq) identifies two active Oryco LTR retrotransposons in the rice cultivar Dongjin
por: Koo, Hyunjin, et al.
Publicado: (2022)

De novo genome assembly and genome skims reveal LTRs dominate the genome of a limestone endemic Mountainsnail (Oreohelix idahoensis)
por: Linscott, T. Mason, et al.
Publicado: (2022)

Use of Endogenous Retroviral Sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy
por: Jern, Patric, et al.
Publicado: (2005)

Parental LTRs Are Important in a Construct of a Stable and Efficient Replication-Competent Infectious Molecular Clone of HIV-1 CRF08_BC
por: Zhang, Qiwei, et al.
Publicado: (2012)

Unexpected Diversity and Expression of Avian Endogenous Retroviruses
por: Bolisetty, Mohan, et al.
Publicado: (2012)

A Unique Spumavirus Gag N-terminal Domain with Functional Properties of Orthoretroviral Matrix and Capsid
por: Goldstone, David C., et al.
Publicado: (2013)

Automated recognition of retroviral sequences in genomic data—RetroTector(©)
por: Sperber, Göran O., et al.
Publicado: (2007)

RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences
por: Sperber, Göran, et al.
Publicado: (2009)

Coe1 in Beta vulgaris L. Has a Tnp2-Domain DNA Transposase Gene within Putative LTRs and Other Retroelement-Like Features
por: Kuykendall, David, et al.
Publicado: (2008)

Classification and characterization of human endogenous retroviruses; mosaic forms are common
por: Vargiu, Laura, et al.
Publicado: (2016)

Methods for estimating human endogenous retrovirus activities from EST databases
por: Oja, Merja, et al.
Publicado: (2007)

Orthoretroviral-like prototype foamy virus gag-pol expression is compatible with viral replication
por: Swiersy, Anka, et al.
Publicado: (2011)

Accurate ab Initio Spin Densities
por: Boguslawski, Katharina, et al.
Publicado: (2012)

Discovering chemistry with an ab initio nanoreactor
por: Wang, Lee-Ping, et al.
Publicado: (2014)

AUGUSTUS: ab initio prediction of alternative transcripts
por: Stanke, Mario, et al.
Publicado: (2006)

Ab initio gene identification in metagenomic sequences
por: Zhu, Wenhan, et al.
Publicado: (2010)

Germacrene D Cyclization: An Ab Initio Investigation
por: Setzer, William N.
Publicado: (2008)

Ab initio calculations of light ion reactions
por: Navrátil, P, et al.
Publicado: (2012)

AIDA: ab initio domain assembly server
por: Xu, Dong, et al.
Publicado: (2014)

Ab initio structure determination of n-diamond
por: Li, Da, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_hhosopjmvtgmsnp536233nm3ep