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Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases

Throughout molecular evolution, organisms create assorted chemicals in response to varying ecological niches. Catalytic landscapes underlie metabolic evolution, wherein mutational steps alter the biosynthetic properties of enzymes. We report the first systematic quantitative characterization of a ca...

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Autores principales: O’Maille, P.E., Malone, A., Dellas, N, Hess, B. A., Smentek, L., Sheehan, I., Greenhagen, B.T., Chappell, J., Manning, G., Noel, J.P.
Formato: Texto
Lenguaje:English
Publicado: 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2664519/
https://www.ncbi.nlm.nih.gov/pubmed/18776889
http://dx.doi.org/10.1038/nchembio.113
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author O’Maille, P.E.
Malone, A.
Dellas, N
Hess, B. A.
Smentek, L.
Sheehan, I.
Greenhagen, B.T.
Chappell, J.
Manning, G.
Noel, J.P.
author_facet O’Maille, P.E.
Malone, A.
Dellas, N
Hess, B. A.
Smentek, L.
Sheehan, I.
Greenhagen, B.T.
Chappell, J.
Manning, G.
Noel, J.P.
author_sort O’Maille, P.E.
collection PubMed
description Throughout molecular evolution, organisms create assorted chemicals in response to varying ecological niches. Catalytic landscapes underlie metabolic evolution, wherein mutational steps alter the biosynthetic properties of enzymes. We report the first systematic quantitative characterization of a catalytic landscape underlying the evolution of sesquiterpene chemical diversity. Based on our previous discovery of a set of 9 naturally occurring amino acid substitutions that functionally inter-converted orthologous sesquiterpene synthases from Nicotiana tabaccum and Hyoscyamus muticus, we created a library of all possible residue combinations (2(9) = 512) in the N. tabaccum parent. The product spectra of 418 active enzymes to reveal a rugged landscape where several minimal combinations of the 9 mutations encode convergent solutions to the inter-conversions of parental activities. Quantitative comparisons indicate context dependence for mutational effects - epistasis - in product specificity and promiscuity. These results provide a measure of the mutational accessibility of phenotypic variability among a diverging lineage of terpene synthases.
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spelling pubmed-26645192009-04-02 Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases O’Maille, P.E. Malone, A. Dellas, N Hess, B. A. Smentek, L. Sheehan, I. Greenhagen, B.T. Chappell, J. Manning, G. Noel, J.P. Nat Chem Biol Article Throughout molecular evolution, organisms create assorted chemicals in response to varying ecological niches. Catalytic landscapes underlie metabolic evolution, wherein mutational steps alter the biosynthetic properties of enzymes. We report the first systematic quantitative characterization of a catalytic landscape underlying the evolution of sesquiterpene chemical diversity. Based on our previous discovery of a set of 9 naturally occurring amino acid substitutions that functionally inter-converted orthologous sesquiterpene synthases from Nicotiana tabaccum and Hyoscyamus muticus, we created a library of all possible residue combinations (2(9) = 512) in the N. tabaccum parent. The product spectra of 418 active enzymes to reveal a rugged landscape where several minimal combinations of the 9 mutations encode convergent solutions to the inter-conversions of parental activities. Quantitative comparisons indicate context dependence for mutational effects - epistasis - in product specificity and promiscuity. These results provide a measure of the mutational accessibility of phenotypic variability among a diverging lineage of terpene synthases. 2008-09-07 2008-10 /pmc/articles/PMC2664519/ /pubmed/18776889 http://dx.doi.org/10.1038/nchembio.113 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
O’Maille, P.E.
Malone, A.
Dellas, N
Hess, B. A.
Smentek, L.
Sheehan, I.
Greenhagen, B.T.
Chappell, J.
Manning, G.
Noel, J.P.
Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
title Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
title_full Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
title_fullStr Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
title_full_unstemmed Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
title_short Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
title_sort quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2664519/
https://www.ncbi.nlm.nih.gov/pubmed/18776889
http://dx.doi.org/10.1038/nchembio.113
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