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iMembrane: homology-based membrane-insertion of proteins

Summary: iMembrane is a homology-based method, which predicts a membrane protein's position within a lipid bilayer. It projects the results of coarse-grained molecular dynamics simulations onto any membrane protein structure or sequence provided by the user. iMembrane is simple to use and is cu...

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Detalles Bibliográficos
Autores principales: Kelm, Sebastian, Shi, Jiye, Deane, Charlotte M.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2666813/
https://www.ncbi.nlm.nih.gov/pubmed/19237449
http://dx.doi.org/10.1093/bioinformatics/btp102
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author Kelm, Sebastian
Shi, Jiye
Deane, Charlotte M.
author_facet Kelm, Sebastian
Shi, Jiye
Deane, Charlotte M.
author_sort Kelm, Sebastian
collection PubMed
description Summary: iMembrane is a homology-based method, which predicts a membrane protein's position within a lipid bilayer. It projects the results of coarse-grained molecular dynamics simulations onto any membrane protein structure or sequence provided by the user. iMembrane is simple to use and is currently the only computational method allowing the rapid prediction of a membrane protein's lipid bilayer insertion. Bilayer insertion data are essential in the accurate structural modelling of membrane proteins or the design of drugs that target them. Availability: http://imembrane.info. iMembrane is available under a non-commercial open-source licence, upon request. Contact: kelm@stats.ox.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online and at http://www.stats.ox.ac.uk/proteins/resources.
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spelling pubmed-26668132009-04-29 iMembrane: homology-based membrane-insertion of proteins Kelm, Sebastian Shi, Jiye Deane, Charlotte M. Bioinformatics Applications Note Summary: iMembrane is a homology-based method, which predicts a membrane protein's position within a lipid bilayer. It projects the results of coarse-grained molecular dynamics simulations onto any membrane protein structure or sequence provided by the user. iMembrane is simple to use and is currently the only computational method allowing the rapid prediction of a membrane protein's lipid bilayer insertion. Bilayer insertion data are essential in the accurate structural modelling of membrane proteins or the design of drugs that target them. Availability: http://imembrane.info. iMembrane is available under a non-commercial open-source licence, upon request. Contact: kelm@stats.ox.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online and at http://www.stats.ox.ac.uk/proteins/resources. Oxford University Press 2009-04-15 2009-02-23 /pmc/articles/PMC2666813/ /pubmed/19237449 http://dx.doi.org/10.1093/bioinformatics/btp102 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Kelm, Sebastian
Shi, Jiye
Deane, Charlotte M.
iMembrane: homology-based membrane-insertion of proteins
title iMembrane: homology-based membrane-insertion of proteins
title_full iMembrane: homology-based membrane-insertion of proteins
title_fullStr iMembrane: homology-based membrane-insertion of proteins
title_full_unstemmed iMembrane: homology-based membrane-insertion of proteins
title_short iMembrane: homology-based membrane-insertion of proteins
title_sort imembrane: homology-based membrane-insertion of proteins
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2666813/
https://www.ncbi.nlm.nih.gov/pubmed/19237449
http://dx.doi.org/10.1093/bioinformatics/btp102
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