Cargando…

Missing call bias in high-throughput genotyping

BACKGROUND: The advent of high-throughput and cost-effective genotyping platforms made genome-wide association (GWA) studies a reality. While the primary focus has been invested upon the improvement of reducing genotyping error, the problems associated with missing calls are largely overlooked. RESU...

Descripción completa

Detalles Bibliográficos
Autores principales:	Fu, Wenqing, Wang, Yi, Wang, Ying, Li, Rui, Lin, Rong, Jin, Li
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2670840/ https://www.ncbi.nlm.nih.gov/pubmed/19284636 http://dx.doi.org/10.1186/1471-2164-10-106

Ejemplares similares

Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases
por: Morovic, Wesley, et al.
Publicado: (2016)

High-Throughput SNP Genotyping
por: Jenkins, Suzanne, et al.
Publicado: (2002)

Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing
por: Varala, Kranthi, et al.
Publicado: (2011)

Correcting nucleotide-specific biases in high-throughput sequencing data
por: Wang, Jeremy R., et al.
Publicado: (2017)

Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing
por: Ros-Freixedes, Roger, et al.
Publicado: (2018)

Fast accurate missing SNP genotype local imputation
por: Wang, Yining, et al.
Publicado: (2012)

BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution
por: Ye, Chengxi, et al.
Publicado: (2014)

Development and implementation of high-throughput SNP genotyping in barley
por: Close, Timothy J, et al.
Publicado: (2009)

High throughput SNP discovery and genotyping in hexaploid wheat
por: Rimbert, Hélène, et al.
Publicado: (2018)

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
por: Nielsen, Rasmus, et al.
Publicado: (2012)

The projack: a resampling approach to correct for ranking bias in high-throughput studies
por: Zhou, Yi-Hui, et al.
Publicado: (2016)

The impact of genotype calling errors on family-based studies
por: Yan, Qi, et al.
Publicado: (2016)

A Sinister Bias for Calling Fouls in Soccer
por: Kranjec, Alexander, et al.
Publicado: (2010)

High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays
por: Wang, Jun, et al.
Publicado: (2009)

Application of high-throughput amplicon sequencing-based SSR genotyping in genetic background screening
por: Li, Tiantian, et al.
Publicado: (2019)

ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction
por: Hu, Zhiqiu, et al.
Publicado: (2012)

The power of retrotransposons in high-throughput genotyping and sequencing
por: Arvas, Yunus Emre, et al.
Publicado: (2023)

Weight bias: a call to action
por: Alberga, Angela S., et al.
Publicado: (2016)

Summarizing and correcting the GC content bias in high-throughput sequencing
por: Benjamini, Yuval, et al.
Publicado: (2012)

Application of Nanopore Sequencing for High Throughput Genotyping in Horses
por: Gurgul, Artur, et al.
Publicado: (2023)

Base calling for high-throughput short-read sequencing: dynamic programming solutions
por: Das, Shreepriya, et al.
Publicado: (2013)

High-Throughput High-Resolution Class I HLA Genotyping in East Africa
por: Koehler, Rebecca N., et al.
Publicado: (2010)

A New Genotype Imputation Method with Tolerance to High Missing Rate and Rare Variants
por: Yang, Yumei, et al.
Publicado: (2014)

Study on the Postoperative Pain Calls for More Methods to Control Potential Bias
por: Guo, Wei, et al.
Publicado: (2016)

Operator bias in software-aided bat call identification
por: Fritsch, Georg, et al.
Publicado: (2014)

Genotype calling and haplotyping in parent-offspring trios
por: Chen, Wei, et al.
Publicado: (2013)

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing
por: Sun, Xiaowen, et al.
Publicado: (2013)

Look who is calling: a comparison of genotype calling algorithms
por: Vens, Maren, et al.
Publicado: (2009)

High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplification
por: Faruqi, A Fawad, et al.
Publicado: (2001)

High-throughput phenotyping to dissect genotypic differences in safflower for drought tolerance
por: Joshi, Sameer, et al.
Publicado: (2021)

Automated genotyping of microsatellite loci from feces with high throughput sequences
por: Salado, Isabel, et al.
Publicado: (2021)

Correcting for sequence biases in present/absent calls
por: Schuster, Eugene F, et al.
Publicado: (2007)

PCR Strategies for Complete Allele Calling in Multigene Families Using High-Throughput Sequencing Approaches
por: Marmesat, Elena, et al.
Publicado: (2016)

Systematic bias in high-throughput sequencing data and its correction by BEADS
por: Cheung, Ming-Sin, et al.
Publicado: (2011)

High-throughput evaluation of T7 promoter variants using biased randomization and DNA barcoding
por: Komura, Ryo, et al.
Publicado: (2018)

A high-throughput method for genotyping S-RNase alleles in apple
por: Larsen, Bjarne, et al.
Publicado: (2016)

ALG: Automated Genotype Calling of Luminex Assays
por: Bourgey, Mathieu, et al.
Publicado: (2011)

Prioritizing animals for dense genotyping in order to impute missing genotypes of sparsely genotyped animals
por: Yu, Xijiang, et al.
Publicado: (2014)

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data
por: Mimori, Takahiro, et al.
Publicado: (2013)

Low-Cost High-Throughput Genotyping for Diagnosing Familial Hypercholesterolemia
por: Ibrahim, Shirin, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_aqhr84onpt7aulkteul4136017