Cargando…

Stabilizing synthetic data in the DNA of living organisms

Data-encoding synthetic DNA, inserted into the genome of a living organism, is thought to be more robust than the current media. Because the living genome is duplicated and copied into new generations, one of the merits of using DNA material is long-term data storage within heritable media. A disadv...

Descripción completa

Detalles Bibliográficos
Autores principales: Yachie, Nozomu, Ohashi, Yoshiaki, Tomita, Masaru
Formato: Texto
Lenguaje:English
Publicado: Springer Netherlands 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671590/
https://www.ncbi.nlm.nih.gov/pubmed/19083123
http://dx.doi.org/10.1007/s11693-008-9020-5
_version_ 1782166401323106304
author Yachie, Nozomu
Ohashi, Yoshiaki
Tomita, Masaru
author_facet Yachie, Nozomu
Ohashi, Yoshiaki
Tomita, Masaru
author_sort Yachie, Nozomu
collection PubMed
description Data-encoding synthetic DNA, inserted into the genome of a living organism, is thought to be more robust than the current media. Because the living genome is duplicated and copied into new generations, one of the merits of using DNA material is long-term data storage within heritable media. A disadvantage of this approach is that encoded data can be unexpectedly broken by mutation, deletion, and insertion of DNA, which occurs naturally during evolution and prolongation, or laboratory experiments. For this reason, several information theory-based approaches have been developed as an error check of broken DNA data in order to achieve data durability. These approaches cannot efficiently recover badly damaged data-encoding DNA. We recently developed a DNA data-storage approach based on the multiple sequence alignment method to achieve a high level of data durability. In this paper, we overview this technology and discuss strategies for optimal application of this approach.
format Text
id pubmed-2671590
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Springer Netherlands
record_format MEDLINE/PubMed
spelling pubmed-26715902009-04-24 Stabilizing synthetic data in the DNA of living organisms Yachie, Nozomu Ohashi, Yoshiaki Tomita, Masaru Syst Synth Biol Commentary Data-encoding synthetic DNA, inserted into the genome of a living organism, is thought to be more robust than the current media. Because the living genome is duplicated and copied into new generations, one of the merits of using DNA material is long-term data storage within heritable media. A disadvantage of this approach is that encoded data can be unexpectedly broken by mutation, deletion, and insertion of DNA, which occurs naturally during evolution and prolongation, or laboratory experiments. For this reason, several information theory-based approaches have been developed as an error check of broken DNA data in order to achieve data durability. These approaches cannot efficiently recover badly damaged data-encoding DNA. We recently developed a DNA data-storage approach based on the multiple sequence alignment method to achieve a high level of data durability. In this paper, we overview this technology and discuss strategies for optimal application of this approach. Springer Netherlands 2008-12-13 2008-06 /pmc/articles/PMC2671590/ /pubmed/19083123 http://dx.doi.org/10.1007/s11693-008-9020-5 Text en © The Author(s) 2008
spellingShingle Commentary
Yachie, Nozomu
Ohashi, Yoshiaki
Tomita, Masaru
Stabilizing synthetic data in the DNA of living organisms
title Stabilizing synthetic data in the DNA of living organisms
title_full Stabilizing synthetic data in the DNA of living organisms
title_fullStr Stabilizing synthetic data in the DNA of living organisms
title_full_unstemmed Stabilizing synthetic data in the DNA of living organisms
title_short Stabilizing synthetic data in the DNA of living organisms
title_sort stabilizing synthetic data in the dna of living organisms
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671590/
https://www.ncbi.nlm.nih.gov/pubmed/19083123
http://dx.doi.org/10.1007/s11693-008-9020-5
work_keys_str_mv AT yachienozomu stabilizingsyntheticdatainthednaoflivingorganisms
AT ohashiyoshiaki stabilizingsyntheticdatainthednaoflivingorganisms
AT tomitamasaru stabilizingsyntheticdatainthednaoflivingorganisms