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Patterns of Insertion and Deletion in Mammalian Genomes
Nucleotide insertions and deletions (indels) are responsible for gaps in the sequence alignments. Indel is one of the major sources of evolutionary change at the molecular level. We have examined the patterns of insertions and deletions in the 19 mammalian genomes, and found that deletion events are...
Autores principales: | , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Bentham Science Publishers Ltd.
2007
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671719/ https://www.ncbi.nlm.nih.gov/pubmed/19412437 http://dx.doi.org/10.2174/138920207783406479 |
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author | Fan, Yanhui Wang, Wenjuan Ma, Guoji Liang, Lijing Shi, Qi Tao, Shiheng |
author_facet | Fan, Yanhui Wang, Wenjuan Ma, Guoji Liang, Lijing Shi, Qi Tao, Shiheng |
author_sort | Fan, Yanhui |
collection | PubMed |
description | Nucleotide insertions and deletions (indels) are responsible for gaps in the sequence alignments. Indel is one of the major sources of evolutionary change at the molecular level. We have examined the patterns of insertions and deletions in the 19 mammalian genomes, and found that deletion events are more common than insertions in the mammalian genomes. Both the number of insertions and deletions decrease rapidly when the gap length increases and single nucleotide indel is the most frequent in all indel events. The frequencies of both insertions and deletions can be described well by power law. |
format | Text |
id | pubmed-2671719 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2007 |
publisher | Bentham Science Publishers Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-26717192009-04-30 Patterns of Insertion and Deletion in Mammalian Genomes Fan, Yanhui Wang, Wenjuan Ma, Guoji Liang, Lijing Shi, Qi Tao, Shiheng Curr Genomics Article Nucleotide insertions and deletions (indels) are responsible for gaps in the sequence alignments. Indel is one of the major sources of evolutionary change at the molecular level. We have examined the patterns of insertions and deletions in the 19 mammalian genomes, and found that deletion events are more common than insertions in the mammalian genomes. Both the number of insertions and deletions decrease rapidly when the gap length increases and single nucleotide indel is the most frequent in all indel events. The frequencies of both insertions and deletions can be described well by power law. Bentham Science Publishers Ltd. 2007-09 /pmc/articles/PMC2671719/ /pubmed/19412437 http://dx.doi.org/10.2174/138920207783406479 Text en ©2007 Bentham Science Publishers Ltd. http://creativecommons.org/licenses/by/2.5/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.5/) which permits unrestrictive use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Article Fan, Yanhui Wang, Wenjuan Ma, Guoji Liang, Lijing Shi, Qi Tao, Shiheng Patterns of Insertion and Deletion in Mammalian Genomes |
title | Patterns of Insertion and Deletion in Mammalian Genomes |
title_full | Patterns of Insertion and Deletion in Mammalian Genomes |
title_fullStr | Patterns of Insertion and Deletion in Mammalian Genomes |
title_full_unstemmed | Patterns of Insertion and Deletion in Mammalian Genomes |
title_short | Patterns of Insertion and Deletion in Mammalian Genomes |
title_sort | patterns of insertion and deletion in mammalian genomes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671719/ https://www.ncbi.nlm.nih.gov/pubmed/19412437 http://dx.doi.org/10.2174/138920207783406479 |
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