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Patterns of Insertion and Deletion in Mammalian Genomes

Nucleotide insertions and deletions (indels) are responsible for gaps in the sequence alignments. Indel is one of the major sources of evolutionary change at the molecular level. We have examined the patterns of insertions and deletions in the 19 mammalian genomes, and found that deletion events are...

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Detalles Bibliográficos
Autores principales: Fan, Yanhui, Wang, Wenjuan, Ma, Guoji, Liang, Lijing, Shi, Qi, Tao, Shiheng
Formato: Texto
Lenguaje:English
Publicado: Bentham Science Publishers Ltd. 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671719/
https://www.ncbi.nlm.nih.gov/pubmed/19412437
http://dx.doi.org/10.2174/138920207783406479
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author Fan, Yanhui
Wang, Wenjuan
Ma, Guoji
Liang, Lijing
Shi, Qi
Tao, Shiheng
author_facet Fan, Yanhui
Wang, Wenjuan
Ma, Guoji
Liang, Lijing
Shi, Qi
Tao, Shiheng
author_sort Fan, Yanhui
collection PubMed
description Nucleotide insertions and deletions (indels) are responsible for gaps in the sequence alignments. Indel is one of the major sources of evolutionary change at the molecular level. We have examined the patterns of insertions and deletions in the 19 mammalian genomes, and found that deletion events are more common than insertions in the mammalian genomes. Both the number of insertions and deletions decrease rapidly when the gap length increases and single nucleotide indel is the most frequent in all indel events. The frequencies of both insertions and deletions can be described well by power law.
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spelling pubmed-26717192009-04-30 Patterns of Insertion and Deletion in Mammalian Genomes Fan, Yanhui Wang, Wenjuan Ma, Guoji Liang, Lijing Shi, Qi Tao, Shiheng Curr Genomics Article Nucleotide insertions and deletions (indels) are responsible for gaps in the sequence alignments. Indel is one of the major sources of evolutionary change at the molecular level. We have examined the patterns of insertions and deletions in the 19 mammalian genomes, and found that deletion events are more common than insertions in the mammalian genomes. Both the number of insertions and deletions decrease rapidly when the gap length increases and single nucleotide indel is the most frequent in all indel events. The frequencies of both insertions and deletions can be described well by power law. Bentham Science Publishers Ltd. 2007-09 /pmc/articles/PMC2671719/ /pubmed/19412437 http://dx.doi.org/10.2174/138920207783406479 Text en ©2007 Bentham Science Publishers Ltd. http://creativecommons.org/licenses/by/2.5/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.5/) which permits unrestrictive use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Article
Fan, Yanhui
Wang, Wenjuan
Ma, Guoji
Liang, Lijing
Shi, Qi
Tao, Shiheng
Patterns of Insertion and Deletion in Mammalian Genomes
title Patterns of Insertion and Deletion in Mammalian Genomes
title_full Patterns of Insertion and Deletion in Mammalian Genomes
title_fullStr Patterns of Insertion and Deletion in Mammalian Genomes
title_full_unstemmed Patterns of Insertion and Deletion in Mammalian Genomes
title_short Patterns of Insertion and Deletion in Mammalian Genomes
title_sort patterns of insertion and deletion in mammalian genomes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671719/
https://www.ncbi.nlm.nih.gov/pubmed/19412437
http://dx.doi.org/10.2174/138920207783406479
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