Jalview Version 2—a multiple sequence alignment editor and analysis workbench

Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms...

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Detalles Bibliográficos
Autores principales: Waterhouse, Andrew M., Procter, James B., Martin, David M. A., Clamp, Michèle, Barton, Geoffrey J.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2672624/
https://www.ncbi.nlm.nih.gov/pubmed/19151095
http://dx.doi.org/10.1093/bioinformatics/btp033
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author Waterhouse, Andrew M.
Procter, James B.
Martin, David M. A.
Clamp, Michèle
Barton, Geoffrey J.
author_facet Waterhouse, Andrew M.
Procter, James B.
Martin, David M. A.
Clamp, Michèle
Barton, Geoffrey J.
author_sort Waterhouse, Andrew M.
collection PubMed
description Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk
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spelling pubmed-26726242009-04-29 Jalview Version 2—a multiple sequence alignment editor and analysis workbench Waterhouse, Andrew M. Procter, James B. Martin, David M. A. Clamp, Michèle Barton, Geoffrey J. Bioinformatics Applications Note Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk Oxford University Press 2009-05-01 2009-01-16 /pmc/articles/PMC2672624/ /pubmed/19151095 http://dx.doi.org/10.1093/bioinformatics/btp033 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Waterhouse, Andrew M.
Procter, James B.
Martin, David M. A.
Clamp, Michèle
Barton, Geoffrey J.
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
title Jalview Version 2—a multiple sequence alignment editor and analysis workbench
title_full Jalview Version 2—a multiple sequence alignment editor and analysis workbench
title_fullStr Jalview Version 2—a multiple sequence alignment editor and analysis workbench
title_full_unstemmed Jalview Version 2—a multiple sequence alignment editor and analysis workbench
title_short Jalview Version 2—a multiple sequence alignment editor and analysis workbench
title_sort jalview version 2—a multiple sequence alignment editor and analysis workbench
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2672624/
https://www.ncbi.nlm.nih.gov/pubmed/19151095
http://dx.doi.org/10.1093/bioinformatics/btp033
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