Cargando…

FlyPhy: a phylogenomic analysis platform for Drosophila genes and gene families

BACKGROUND: The availability of 12 fully sequenced Drosophila species genomes provides an excellent opportunity to explore the evolutionary mechanism, structure and function of gene families in Drosophila. Currently, several important resources, such as FlyBase, FlyMine and DroSpeGe, have been devot...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wu, Jinyu, Xu, Xiang, Xiao, Jian, Xu, Long, Yi, Huiguang, Gao, Shengjie, Liu, Jing, Bao, Qiyu, Zhao, Fangqing, Li, Xiaokun
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Database
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680407/ https://www.ncbi.nlm.nih.gov/pubmed/19393099 http://dx.doi.org/10.1186/1471-2105-10-123

Ejemplares similares

cTFbase: a database for comparative genomics of transcription factors in cyanobacteria
por: Wu, Jinyu, et al.
Publicado: (2007)

FlyBase: establishing a Gene Group resource for Drosophila melanogaster
por: Attrill, Helen, et al.
Publicado: (2016)

A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
por: Dehal, Paramvir S, et al.
Publicado: (2006)

FlyPNS, a database of the Drosophila embryonic and larval peripheral nervous system
por: Orgogozo, Virginie, et al.
Publicado: (2005)

FUNYBASE: a FUNgal phYlogenomic dataBASE
por: Marthey, Sylvain, et al.
Publicado: (2008)

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation
por: Loevenich, Sandra N, et al.
Publicado: (2009)

OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes
por: Thybert, David, et al.
Publicado: (2008)

FlyBase: updates to the Drosophila melanogaster knowledge base
por: Larkin, Aoife, et al.
Publicado: (2020)

A phylogenomic profile of hemerythrins, the nonheme diiron binding respiratory proteins
por: Bailly, Xavier, et al.
Publicado: (2008)

SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees
por: Mallo, Diego, et al.
Publicado: (2016)

phiBIOTICS: catalogue of therapeutic enzybiotics, relevant research studies and practical applications
por: Hojckova, Katarina, et al.
Publicado: (2013)

FlyAtlas 2 in 2022: enhancements to the Drosophila melanogaster expression atlas
por: Krause, Sue A, et al.
Publicado: (2021)

gsGator: an integrated web platform for cross-species gene set analysis
por: Kang, Hyunjung, et al.
Publicado: (2014)

MidExDB: A database of Drosophila CNS midline cell gene expression
por: Wheeler, Scott R, et al.
Publicado: (2009)

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions
por: Yu, Jingkai, et al.
Publicado: (2008)

RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina
por: Kalathur, Ravi Kiran Reddy, et al.
Publicado: (2008)

NexGenEx-Tom: a gene expression platform to investigate the functionalities of the tomato genome
por: Bostan, Hamed, et al.
Publicado: (2015)

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila
por: Pacifico, Svetlana, et al.
Publicado: (2006)

CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes
por: Wu, Wanying, et al.
Publicado: (2020)

PHI-base: the pathogen–host interactions database
por: Urban, Martin, et al.
Publicado: (2020)

YeastWeb: a workset-centric web resource for gene family analysis in yeast
por: Chu, Yanhui, et al.
Publicado: (2010)

FlyRNAi.org—the database of the Drosophila RNAi screening center and transgenic RNAi project: 2017 update
por: Hu, Yanhui, et al.
Publicado: (2017)

FlyRNAi.org—the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update
por: Hu, Yanhui, et al.
Publicado: (2020)

Genomics4RD: An integrated platform to share Canadian deep‐phenotype and multiomic data for international rare disease gene discovery
por: Driver, Hannah G., et al.
Publicado: (2022)

FertilityOnline: A Straightforward Pipeline for Functional Gene Annotation and Disease Mutation Discovery
por: Gao, Jianing, et al.
Publicado: (2022)

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
por: dos Santos, Gilberto, et al.
Publicado: (2014)

BIR Pipeline for Preparation of Phylogenomic Data
por: Kumar, Surendra, et al.
Publicado: (2015)

BGFD: an integrated multi-omics database of barley gene families
por: Li, Tingting, et al.
Publicado: (2022)

EpilepsyGene: a genetic resource for genes and mutations related to epilepsy
por: Ran, Xia, et al.
Publicado: (2014)

The Pathogen-Host Interactions database (PHI-base): additions and future developments
por: Urban, Martin, et al.
Publicado: (2014)

WaspAtlas: a Nasonia vitripennis gene database and analysis platform
por: Davies, Nathaniel J., et al.
Publicado: (2015)

Sequencing and Genetic Variation of Multidrug Resistance Plasmids in Klebsiella pneumoniae
por: Zhao, Fangqing, et al.
Publicado: (2010)

InterMitoBase: An annotated database and analysis platform of protein-protein interactions for human mitochondria
por: Gu, Zuguang, et al.
Publicado: (2011)

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos
por: Cicin-Sain, Damjan, et al.
Publicado: (2014)

Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies
por: Zuo, Jing, et al.
Publicado: (2017)

Nicotiana attenuata Data Hub (NaDH): an integrative platform for exploring genomic, transcriptomic and metabolomic data in wild tobacco
por: Brockmöller, Thomas, et al.
Publicado: (2017)

FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
por: Leader, David P, et al.
Publicado: (2018)

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase
por: Ienasescu, Hans, et al.
Publicado: (2016)

The Gene Set Builder: collation, curation, and distribution of sets of genes
por: Yusuf, Dimas, et al.
Publicado: (2005)

gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data
por: Shi, Wenyu, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_rbi1nm1tk4tgnh8tvjq6a831mr