Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype

Summary:We present a visualization tool applied on genome-wide association data, revealing disease-associated haplotypes, epistatically interacting loci, as well as providing visual signatures of multivariate correlations of genetic markers with respect to a phenotype. Availability:Freely available...

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Detalles Bibliográficos
Autores principales: Watkinson, John, Anastassiou, Dimitris
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682510/
https://www.ncbi.nlm.nih.gov/pubmed/19297347
http://dx.doi.org/10.1093/bioinformatics/btp159
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author Watkinson, John
Anastassiou, Dimitris
author_facet Watkinson, John
Anastassiou, Dimitris
author_sort Watkinson, John
collection PubMed
description Summary:We present a visualization tool applied on genome-wide association data, revealing disease-associated haplotypes, epistatically interacting loci, as well as providing visual signatures of multivariate correlations of genetic markers with respect to a phenotype. Availability:Freely available on the web at: http://www.ee.columbia.edu/~anastas/sdplots Contact:anastas@ee.columbia.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-26825102009-05-15 Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype Watkinson, John Anastassiou, Dimitris Bioinformatics Applications Note Summary:We present a visualization tool applied on genome-wide association data, revealing disease-associated haplotypes, epistatically interacting loci, as well as providing visual signatures of multivariate correlations of genetic markers with respect to a phenotype. Availability:Freely available on the web at: http://www.ee.columbia.edu/~anastas/sdplots Contact:anastas@ee.columbia.edu Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2009-06-01 2009-03-17 /pmc/articles/PMC2682510/ /pubmed/19297347 http://dx.doi.org/10.1093/bioinformatics/btp159 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Watkinson, John
Anastassiou, Dimitris
Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype
title Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype
title_full Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype
title_fullStr Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype
title_full_unstemmed Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype
title_short Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype
title_sort synergy disequilibrium plots: graphical visualization of pairwise synergies and redundancies of snps with respect to a phenotype
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682510/
https://www.ncbi.nlm.nih.gov/pubmed/19297347
http://dx.doi.org/10.1093/bioinformatics/btp159
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AT anastassioudimitris synergydisequilibriumplotsgraphicalvisualizationofpairwisesynergiesandredundanciesofsnpswithrespecttoaphenotype

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