GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis

GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the...

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Autores principales: Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, Gajria, Bindu, Gao, Xin, Gingle, Alan, Grant, Greg, Harb, Omar S., Heiges, Mark, Innamorato, Frank, Iodice, John, Kissinger, Jessica C., Kraemer, Eileen, Li, Wei, Miller, John A., Morrison, Hilary G., Nayak, Vishal, Pennington, Cary, Pinney, Deborah F., Roos, David S., Ross, Chris, Stoeckert, Christian J., Sullivan, Steven, Treatman, Charles, Wang, Haiming
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686445/
https://www.ncbi.nlm.nih.gov/pubmed/18824479
http://dx.doi.org/10.1093/nar/gkn631
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author Aurrecoechea, Cristina
Brestelli, John
Brunk, Brian P.
Carlton, Jane M.
Dommer, Jennifer
Fischer, Steve
Gajria, Bindu
Gao, Xin
Gingle, Alan
Grant, Greg
Harb, Omar S.
Heiges, Mark
Innamorato, Frank
Iodice, John
Kissinger, Jessica C.
Kraemer, Eileen
Li, Wei
Miller, John A.
Morrison, Hilary G.
Nayak, Vishal
Pennington, Cary
Pinney, Deborah F.
Roos, David S.
Ross, Chris
Stoeckert, Christian J.
Sullivan, Steven
Treatman, Charles
Wang, Haiming
author_facet Aurrecoechea, Cristina
Brestelli, John
Brunk, Brian P.
Carlton, Jane M.
Dommer, Jennifer
Fischer, Steve
Gajria, Bindu
Gao, Xin
Gingle, Alan
Grant, Greg
Harb, Omar S.
Heiges, Mark
Innamorato, Frank
Iodice, John
Kissinger, Jessica C.
Kraemer, Eileen
Li, Wei
Miller, John A.
Morrison, Hilary G.
Nayak, Vishal
Pennington, Cary
Pinney, Deborah F.
Roos, David S.
Ross, Chris
Stoeckert, Christian J.
Sullivan, Steven
Treatman, Charles
Wang, Haiming
author_sort Aurrecoechea, Cristina
collection PubMed
description GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data.
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spelling pubmed-26864452009-06-15 GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis Aurrecoechea, Cristina Brestelli, John Brunk, Brian P. Carlton, Jane M. Dommer, Jennifer Fischer, Steve Gajria, Bindu Gao, Xin Gingle, Alan Grant, Greg Harb, Omar S. Heiges, Mark Innamorato, Frank Iodice, John Kissinger, Jessica C. Kraemer, Eileen Li, Wei Miller, John A. Morrison, Hilary G. Nayak, Vishal Pennington, Cary Pinney, Deborah F. Roos, David S. Ross, Chris Stoeckert, Christian J. Sullivan, Steven Treatman, Charles Wang, Haiming Nucleic Acids Res Articles GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data. Oxford University Press 2009-01 2008-09-29 /pmc/articles/PMC2686445/ /pubmed/18824479 http://dx.doi.org/10.1093/nar/gkn631 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Aurrecoechea, Cristina
Brestelli, John
Brunk, Brian P.
Carlton, Jane M.
Dommer, Jennifer
Fischer, Steve
Gajria, Bindu
Gao, Xin
Gingle, Alan
Grant, Greg
Harb, Omar S.
Heiges, Mark
Innamorato, Frank
Iodice, John
Kissinger, Jessica C.
Kraemer, Eileen
Li, Wei
Miller, John A.
Morrison, Hilary G.
Nayak, Vishal
Pennington, Cary
Pinney, Deborah F.
Roos, David S.
Ross, Chris
Stoeckert, Christian J.
Sullivan, Steven
Treatman, Charles
Wang, Haiming
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
title GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
title_full GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
title_fullStr GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
title_full_unstemmed GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
title_short GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
title_sort giardiadb and trichdb: integrated genomic resources for the eukaryotic protist pathogens giardia lamblia and trichomonas vaginalis
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686445/
https://www.ncbi.nlm.nih.gov/pubmed/18824479
http://dx.doi.org/10.1093/nar/gkn631
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