Cargando…

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

The Ribosomal Database Project (RDP) provides researchers with quality-controlled bacterial and archaeal small subunit rRNA alignments and analysis tools. An improved alignment strategy uses the Infernal secondary structure aware aligner to provide a more consistent higher quality alignment and fast...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T., Garrity, G. M., Tiedje, J. M.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2009
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686447/ https://www.ncbi.nlm.nih.gov/pubmed/19004872 http://dx.doi.org/10.1093/nar/gkn879

Ejemplares similares

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
por: Cole, J. R., et al.
Publicado: (2005)

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
por: Cole, J. R., et al.
Publicado: (2007)

Ribosomal Database Project: data and tools for high throughput rRNA analysis
por: Cole, James R., et al.
Publicado: (2014)

The 3D rRNA modification maps database: with interactive tools for ribosome analysis
por: Piekna-Przybylska, Dorota, et al.
Publicado: (2008)

The DARC site: a database of aligned ribosomal complexes
por: Jarasch, Alexander, et al.
Publicado: (2012)

Comprehensive approaches to addressing mental health needs and enhancing school security: a hybrid type II cluster randomized trial
por: Eisman, Andria B., et al.
Publicado: (2020)

Prevention of white spot lesions around orthodontic brackets using organoselenium-containing antimicrobial enamel surface sealant
por: Amaechi, Bennett T., et al.
Publicado: (2021)

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function
por: Sloan, Katherine E., et al.
Publicado: (2016)

Expert Consensus on the Resource Needs of Autistic Children and Young People in Ireland During the Early Months of the COVID-19 Pandemic
por: Egan, Cillian, et al.
Publicado: (2023)

Apoptosis-like programmed cell death induces antisense ribosomal RNA (rRNA) fragmentation and rRNA degradation in Leishmania
por: Padmanabhan, P K, et al.
Publicado: (2012)

Study protocol for autism specific transition resources (T-Res Study): developing a flexible resource package for dealing with the loosening and/or lifting of COVID-19 related restrictions
por: Smyth, Sinéad, et al.
Publicado: (2021)

Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly
por: Huang, Shijie, et al.
Publicado: (2020)

Ribosome heterogeneity in tumorigenesis: the rRNA point of view
por: Marcel, Virginie, et al.
Publicado: (2015)

Turning Uridines around: Role of rRNA Pseudouridylation in Ribosome Biogenesis and Ribosomal Function
por: Penzo, Marianna, et al.
Publicado: (2018)

The critical function of the plastid rRNA methyltransferase, CMAL, in ribosome biogenesis and plant development
por: Zou, Meijuan, et al.
Publicado: (2020)

FunGene: the functional gene pipeline and repository
por: Fish, Jordan A., et al.
Publicado: (2013)

The impact of transcriptional tuning on in vitro integrated rRNA transcription and ribosome construction
por: Fritz, Brian R., et al.
Publicado: (2014)

Optimization of Ribosome Structure and Function by rRNA Base Modification
por: Baxter-Roshek, Jennifer L., et al.
Publicado: (2007)

The nucleoid as a site of rRNA processing and ribosome assembly
por: Bohne, Alexandra-Viola
Publicado: (2014)

Disruption of ribosome assembly in yeast blocks cotranscriptional pre-rRNA processing and affects the global hierarchy of ribosome biogenesis
por: Talkish, Jason, et al.
Publicado: (2016)

RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
por: Teeling, Hanno, et al.
Publicado: (2006)

Engineering the rRNA decoding site of eukaryotic cytosolic ribosomes in bacteria
por: Hobbie, Sven N., et al.
Publicado: (2007)

Eukaryote-specific rRNA expansion segments function in ribosome biogenesis
por: Ramesh, Madhumitha, et al.
Publicado: (2016)

The Protist Ribosomal Reference database (PR(2)): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
por: Guillou, Laure, et al.
Publicado: (2013)

The human 18S rRNA base methyltransferases DIMT1L and WBSCR22-TRMT112 but not rRNA modification are required for ribosome biogenesis
por: Zorbas, Christiane, et al.
Publicado: (2015)

Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria)
por: Johansen, Jeffrey R., et al.
Publicado: (2017)

The Small Subunit rRNA Modification Database
por: McCloskey, James A., et al.
Publicado: (2005)

Development of a Ribosomal DNA ITS2 Marker for the Identification of the Thrips, Scirtothrips dorsalis
por: Farris, R E, et al.
Publicado: (2010)

Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan
por: Martínez, Allyson K., et al.
Publicado: (2014)

18S-NemaBase: Curated 18S rRNA Database of Nematode Sequences
por: Gattoni, Kaitlin, et al.
Publicado: (2023)

Small Molecule RBI2 Disrupts Ribosome Biogenesis through Pre-rRNA Depletion
por: Scull, Catherine E., et al.
Publicado: (2023)

Sensitivity to RNase treatment of ribosomes and rRNA from normal rat liver and Novikoff hepatoma.
por: Peclet, C., et al.
Publicado: (1982)

The role of the mitochondrial ribosome in human disease: searching for mutations in 12S mitochondrial rRNA with high disruptive potential
por: Smith, Paul M., et al.
Publicado: (2014)

rRNA Maturation in Yeast Cells Depleted of Large Ribosomal Subunit Proteins
por: Pöll, Gisela, et al.
Publicado: (2009)

Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly
por: Polikanov, Yury S., et al.
Publicado: (2015)

Depletion of ribosomal protein S19 causes a reduction of rRNA synthesis
por: Juli, Giada, et al.
Publicado: (2016)

Visualizing the Role of 2’-OH rRNA Methylations in the Human Ribosome Structure
por: Natchiar, S. Kundhavai, et al.
Publicado: (2018)

Cryo-EM structure and rRNA modification sites of a plant ribosome
por: Cottilli, Patrick, et al.
Publicado: (2022)

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
por: DeSantis, T. Z., et al.
Publicado: (2006)

Partial Methylation at Am100 in 18S rRNA of Baker's Yeast Reveals Ribosome Heterogeneity on the Level of Eukaryotic rRNA Modification
por: Buchhaupt, Markus, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_hk17a1pgmf6h4ioaqel3rrljed