AthaMap, integrating transcriptional and post-transcriptional data

The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403 173 genomic positions of small RNAs have been mapped in the A. thali...

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Detalles Bibliográficos
Autores principales: Bülow, Lorenz, Engelmann, Stefan, Schindler, Martin, Hehl, Reinhard
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686474/
https://www.ncbi.nlm.nih.gov/pubmed/18842622
http://dx.doi.org/10.1093/nar/gkn709
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author Bülow, Lorenz
Engelmann, Stefan
Schindler, Martin
Hehl, Reinhard
author_facet Bülow, Lorenz
Engelmann, Stefan
Schindler, Martin
Hehl, Reinhard
author_sort Bülow, Lorenz
collection PubMed
description The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403 173 genomic positions of small RNAs have been mapped in the A. thaliana genome. These identify 5772 putative post-transcriptionally regulated target genes. AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracting post-transcriptionally regulated genes from such analyses. Furthermore, AthaMap was updated to the TAIR7 genome annotation, a graphic display of gene analysis results was implemented, and the TFBS data content was increased. AthaMap is freely available at http://www.athamap.de/.
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spelling pubmed-26864742009-05-26 AthaMap, integrating transcriptional and post-transcriptional data Bülow, Lorenz Engelmann, Stefan Schindler, Martin Hehl, Reinhard Nucleic Acids Res Articles The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403 173 genomic positions of small RNAs have been mapped in the A. thaliana genome. These identify 5772 putative post-transcriptionally regulated target genes. AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracting post-transcriptionally regulated genes from such analyses. Furthermore, AthaMap was updated to the TAIR7 genome annotation, a graphic display of gene analysis results was implemented, and the TFBS data content was increased. AthaMap is freely available at http://www.athamap.de/. Oxford University Press 2009-01 2008-10-08 /pmc/articles/PMC2686474/ /pubmed/18842622 http://dx.doi.org/10.1093/nar/gkn709 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Bülow, Lorenz
Engelmann, Stefan
Schindler, Martin
Hehl, Reinhard
AthaMap, integrating transcriptional and post-transcriptional data
title AthaMap, integrating transcriptional and post-transcriptional data
title_full AthaMap, integrating transcriptional and post-transcriptional data
title_fullStr AthaMap, integrating transcriptional and post-transcriptional data
title_full_unstemmed AthaMap, integrating transcriptional and post-transcriptional data
title_short AthaMap, integrating transcriptional and post-transcriptional data
title_sort athamap, integrating transcriptional and post-transcriptional data
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686474/
https://www.ncbi.nlm.nih.gov/pubmed/18842622
http://dx.doi.org/10.1093/nar/gkn709
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AT schindlermartin athamapintegratingtranscriptionalandposttranscriptionaldata
AT hehlreinhard athamapintegratingtranscriptionalandposttranscriptionaldata

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