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ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository—a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse—a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas—a...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Oxford University Press
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686529/ https://www.ncbi.nlm.nih.gov/pubmed/19015125 http://dx.doi.org/10.1093/nar/gkn889 |
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author | Parkinson, Helen Kapushesky, Misha Kolesnikov, Nikolay Rustici, Gabriella Shojatalab, Mohammad Abeygunawardena, Niran Berube, Hugo Dylag, Miroslaw Emam, Ibrahim Farne, Anna Holloway, Ele Lukk, Margus Malone, James Mani, Roby Pilicheva, Ekaterina Rayner, Tim F. Rezwan, Faisal Sharma, Anjan Williams, Eleanor Bradley, Xiangqun Zheng Adamusiak, Tomasz Brandizi, Marco Burdett, Tony Coulson, Richard Krestyaninova, Maria Kurnosov, Pavel Maguire, Eamonn Neogi, Sudeshna Guha Rocca-Serra, Philippe Sansone, Susanna-Assunta Sklyar, Nataliya Zhao, Mengyao Sarkans, Ugis Brazma, Alvis |
author_facet | Parkinson, Helen Kapushesky, Misha Kolesnikov, Nikolay Rustici, Gabriella Shojatalab, Mohammad Abeygunawardena, Niran Berube, Hugo Dylag, Miroslaw Emam, Ibrahim Farne, Anna Holloway, Ele Lukk, Margus Malone, James Mani, Roby Pilicheva, Ekaterina Rayner, Tim F. Rezwan, Faisal Sharma, Anjan Williams, Eleanor Bradley, Xiangqun Zheng Adamusiak, Tomasz Brandizi, Marco Burdett, Tony Coulson, Richard Krestyaninova, Maria Kurnosov, Pavel Maguire, Eamonn Neogi, Sudeshna Guha Rocca-Serra, Philippe Sansone, Susanna-Assunta Sklyar, Nataliya Zhao, Mengyao Sarkans, Ugis Brazma, Alvis |
author_sort | Parkinson, Helen |
collection | PubMed |
description | ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository—a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse—a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas—a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently—ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years. |
format | Text |
id | pubmed-2686529 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-26865292009-06-15 ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression Parkinson, Helen Kapushesky, Misha Kolesnikov, Nikolay Rustici, Gabriella Shojatalab, Mohammad Abeygunawardena, Niran Berube, Hugo Dylag, Miroslaw Emam, Ibrahim Farne, Anna Holloway, Ele Lukk, Margus Malone, James Mani, Roby Pilicheva, Ekaterina Rayner, Tim F. Rezwan, Faisal Sharma, Anjan Williams, Eleanor Bradley, Xiangqun Zheng Adamusiak, Tomasz Brandizi, Marco Burdett, Tony Coulson, Richard Krestyaninova, Maria Kurnosov, Pavel Maguire, Eamonn Neogi, Sudeshna Guha Rocca-Serra, Philippe Sansone, Susanna-Assunta Sklyar, Nataliya Zhao, Mengyao Sarkans, Ugis Brazma, Alvis Nucleic Acids Res Articles ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository—a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse—a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas—a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently—ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years. Oxford University Press 2009-01 2008-11-10 /pmc/articles/PMC2686529/ /pubmed/19015125 http://dx.doi.org/10.1093/nar/gkn889 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Parkinson, Helen Kapushesky, Misha Kolesnikov, Nikolay Rustici, Gabriella Shojatalab, Mohammad Abeygunawardena, Niran Berube, Hugo Dylag, Miroslaw Emam, Ibrahim Farne, Anna Holloway, Ele Lukk, Margus Malone, James Mani, Roby Pilicheva, Ekaterina Rayner, Tim F. Rezwan, Faisal Sharma, Anjan Williams, Eleanor Bradley, Xiangqun Zheng Adamusiak, Tomasz Brandizi, Marco Burdett, Tony Coulson, Richard Krestyaninova, Maria Kurnosov, Pavel Maguire, Eamonn Neogi, Sudeshna Guha Rocca-Serra, Philippe Sansone, Susanna-Assunta Sklyar, Nataliya Zhao, Mengyao Sarkans, Ugis Brazma, Alvis ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression |
title | ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression |
title_full | ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression |
title_fullStr | ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression |
title_full_unstemmed | ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression |
title_short | ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression |
title_sort | arrayexpress update—from an archive of functional genomics experiments to the atlas of gene expression |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686529/ https://www.ncbi.nlm.nih.gov/pubmed/19015125 http://dx.doi.org/10.1093/nar/gkn889 |
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