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Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis
Plant hormones are small organic molecules that influence almost every aspect of plant growth and development. Genetic and molecular studies have revealed a large number of genes that are involved in responses to numerous plant hormones, including auxin, gibberellin, cytokinin, abscisic acid, ethyle...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686556/ https://www.ncbi.nlm.nih.gov/pubmed/19015126 http://dx.doi.org/10.1093/nar/gkn873 |
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author | Peng, Zhi-yu Zhou, Xin Li, Linchuan Yu, Xiangchun Li, Hongjiang Jiang, Zhiqiang Cao, Guangyu Bai, Mingyi Wang, Xingchun Jiang, Caifu Lu, Haibin Hou, Xianhui Qu, Lijia Wang, Zhiyong Zuo, Jianru Fu, Xiangdong Su, Zhen Li, Songgang Guo, Hongwei |
author_facet | Peng, Zhi-yu Zhou, Xin Li, Linchuan Yu, Xiangchun Li, Hongjiang Jiang, Zhiqiang Cao, Guangyu Bai, Mingyi Wang, Xingchun Jiang, Caifu Lu, Haibin Hou, Xianhui Qu, Lijia Wang, Zhiyong Zuo, Jianru Fu, Xiangdong Su, Zhen Li, Songgang Guo, Hongwei |
author_sort | Peng, Zhi-yu |
collection | PubMed |
description | Plant hormones are small organic molecules that influence almost every aspect of plant growth and development. Genetic and molecular studies have revealed a large number of genes that are involved in responses to numerous plant hormones, including auxin, gibberellin, cytokinin, abscisic acid, ethylene, jasmonic acid, salicylic acid, and brassinosteroid. Here, we develop an Arabidopsis hormone database, which aims to provide a systematic and comprehensive view of genes participating in plant hormonal regulation, as well as morphological phenotypes controlled by plant hormones. Based on data from mutant studies, transgenic analysis and gene ontology (GO) annotation, we have identified a total of 1026 genes in the Arabidopsis genome that participate in plant hormone functions. Meanwhile, a phenotype ontology is developed to precisely describe myriad hormone-regulated morphological processes with standardized vocabularies. A web interface (http://ahd.cbi.pku.edu.cn) would allow users to quickly get access to information about these hormone-related genes, including sequences, functional category, mutant information, phenotypic description, microarray data and linked publications. Several applications of this database in studying plant hormonal regulation and hormone cross-talk will be presented and discussed. |
format | Text |
id | pubmed-2686556 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-26865562009-05-26 Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis Peng, Zhi-yu Zhou, Xin Li, Linchuan Yu, Xiangchun Li, Hongjiang Jiang, Zhiqiang Cao, Guangyu Bai, Mingyi Wang, Xingchun Jiang, Caifu Lu, Haibin Hou, Xianhui Qu, Lijia Wang, Zhiyong Zuo, Jianru Fu, Xiangdong Su, Zhen Li, Songgang Guo, Hongwei Nucleic Acids Res Articles Plant hormones are small organic molecules that influence almost every aspect of plant growth and development. Genetic and molecular studies have revealed a large number of genes that are involved in responses to numerous plant hormones, including auxin, gibberellin, cytokinin, abscisic acid, ethylene, jasmonic acid, salicylic acid, and brassinosteroid. Here, we develop an Arabidopsis hormone database, which aims to provide a systematic and comprehensive view of genes participating in plant hormonal regulation, as well as morphological phenotypes controlled by plant hormones. Based on data from mutant studies, transgenic analysis and gene ontology (GO) annotation, we have identified a total of 1026 genes in the Arabidopsis genome that participate in plant hormone functions. Meanwhile, a phenotype ontology is developed to precisely describe myriad hormone-regulated morphological processes with standardized vocabularies. A web interface (http://ahd.cbi.pku.edu.cn) would allow users to quickly get access to information about these hormone-related genes, including sequences, functional category, mutant information, phenotypic description, microarray data and linked publications. Several applications of this database in studying plant hormonal regulation and hormone cross-talk will be presented and discussed. Oxford University Press 2009-01 2008-11-10 /pmc/articles/PMC2686556/ /pubmed/19015126 http://dx.doi.org/10.1093/nar/gkn873 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Peng, Zhi-yu Zhou, Xin Li, Linchuan Yu, Xiangchun Li, Hongjiang Jiang, Zhiqiang Cao, Guangyu Bai, Mingyi Wang, Xingchun Jiang, Caifu Lu, Haibin Hou, Xianhui Qu, Lijia Wang, Zhiyong Zuo, Jianru Fu, Xiangdong Su, Zhen Li, Songgang Guo, Hongwei Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis |
title | Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis |
title_full | Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis |
title_fullStr | Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis |
title_full_unstemmed | Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis |
title_short | Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis |
title_sort | arabidopsis hormone database: a comprehensive genetic and phenotypic information database for plant hormone research in arabidopsis |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686556/ https://www.ncbi.nlm.nih.gov/pubmed/19015126 http://dx.doi.org/10.1093/nar/gkn873 |
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