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Selectome: a database of positive selection
Genome wide scans have shown that positive selection is relatively frequent at the molecular level. It is of special interest to identify which protein sites and which phylogenetic branches are affected. We present Selectome, a database which provides the results of a rigorous branch-site specific l...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
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Oxford University Press
2009
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686563/ https://www.ncbi.nlm.nih.gov/pubmed/18957445 http://dx.doi.org/10.1093/nar/gkn768 |
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author | Proux, Estelle Studer, Romain A. Moretti, Sébastien Robinson-Rechavi, Marc |
author_facet | Proux, Estelle Studer, Romain A. Moretti, Sébastien Robinson-Rechavi, Marc |
author_sort | Proux, Estelle |
collection | PubMed |
description | Genome wide scans have shown that positive selection is relatively frequent at the molecular level. It is of special interest to identify which protein sites and which phylogenetic branches are affected. We present Selectome, a database which provides the results of a rigorous branch-site specific likelihood test for positive selection. The Web interface presents test results mapped both onto phylogenetic trees and onto protein alignments. It allows rapid access to results by keyword, gene name, or taxonomy based queries. Selectome is freely available at http://bioinfo.unil.ch/selectome/. |
format | Text |
id | pubmed-2686563 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-26865632009-05-26 Selectome: a database of positive selection Proux, Estelle Studer, Romain A. Moretti, Sébastien Robinson-Rechavi, Marc Nucleic Acids Res Articles Genome wide scans have shown that positive selection is relatively frequent at the molecular level. It is of special interest to identify which protein sites and which phylogenetic branches are affected. We present Selectome, a database which provides the results of a rigorous branch-site specific likelihood test for positive selection. The Web interface presents test results mapped both onto phylogenetic trees and onto protein alignments. It allows rapid access to results by keyword, gene name, or taxonomy based queries. Selectome is freely available at http://bioinfo.unil.ch/selectome/. Oxford University Press 2009-01 2008-10-28 /pmc/articles/PMC2686563/ /pubmed/18957445 http://dx.doi.org/10.1093/nar/gkn768 Text en Published by Oxford University Press 2008 http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Proux, Estelle Studer, Romain A. Moretti, Sébastien Robinson-Rechavi, Marc Selectome: a database of positive selection |
title | Selectome: a database of positive selection |
title_full | Selectome: a database of positive selection |
title_fullStr | Selectome: a database of positive selection |
title_full_unstemmed | Selectome: a database of positive selection |
title_short | Selectome: a database of positive selection |
title_sort | selectome: a database of positive selection |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686563/ https://www.ncbi.nlm.nih.gov/pubmed/18957445 http://dx.doi.org/10.1093/nar/gkn768 |
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