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Selectome: a database of positive selection

Genome wide scans have shown that positive selection is relatively frequent at the molecular level. It is of special interest to identify which protein sites and which phylogenetic branches are affected. We present Selectome, a database which provides the results of a rigorous branch-site specific l...

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Detalles Bibliográficos
Autores principales: Proux, Estelle, Studer, Romain A., Moretti, Sébastien, Robinson-Rechavi, Marc
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686563/
https://www.ncbi.nlm.nih.gov/pubmed/18957445
http://dx.doi.org/10.1093/nar/gkn768
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author Proux, Estelle
Studer, Romain A.
Moretti, Sébastien
Robinson-Rechavi, Marc
author_facet Proux, Estelle
Studer, Romain A.
Moretti, Sébastien
Robinson-Rechavi, Marc
author_sort Proux, Estelle
collection PubMed
description Genome wide scans have shown that positive selection is relatively frequent at the molecular level. It is of special interest to identify which protein sites and which phylogenetic branches are affected. We present Selectome, a database which provides the results of a rigorous branch-site specific likelihood test for positive selection. The Web interface presents test results mapped both onto phylogenetic trees and onto protein alignments. It allows rapid access to results by keyword, gene name, or taxonomy based queries. Selectome is freely available at http://bioinfo.unil.ch/selectome/.
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spelling pubmed-26865632009-05-26 Selectome: a database of positive selection Proux, Estelle Studer, Romain A. Moretti, Sébastien Robinson-Rechavi, Marc Nucleic Acids Res Articles Genome wide scans have shown that positive selection is relatively frequent at the molecular level. It is of special interest to identify which protein sites and which phylogenetic branches are affected. We present Selectome, a database which provides the results of a rigorous branch-site specific likelihood test for positive selection. The Web interface presents test results mapped both onto phylogenetic trees and onto protein alignments. It allows rapid access to results by keyword, gene name, or taxonomy based queries. Selectome is freely available at http://bioinfo.unil.ch/selectome/. Oxford University Press 2009-01 2008-10-28 /pmc/articles/PMC2686563/ /pubmed/18957445 http://dx.doi.org/10.1093/nar/gkn768 Text en Published by Oxford University Press 2008 http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Proux, Estelle
Studer, Romain A.
Moretti, Sébastien
Robinson-Rechavi, Marc
Selectome: a database of positive selection
title Selectome: a database of positive selection
title_full Selectome: a database of positive selection
title_fullStr Selectome: a database of positive selection
title_full_unstemmed Selectome: a database of positive selection
title_short Selectome: a database of positive selection
title_sort selectome: a database of positive selection
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686563/
https://www.ncbi.nlm.nih.gov/pubmed/18957445
http://dx.doi.org/10.1093/nar/gkn768
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