Minimotif miner 2nd release: a database and web system for motif search

Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function defin...

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Detalles Bibliográficos
Autores principales: Rajasekaran, Sanguthevar, Balla, Sudha, Gradie, Patrick, Gryk, Michael R., Kadaveru, Krishna, Kundeti, Vamsi, Maciejewski, Mark W., Mi, Tian, Rubino, Nicholas, Vyas, Jay, Schiller, Martin R.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686579/
https://www.ncbi.nlm.nih.gov/pubmed/18978024
http://dx.doi.org/10.1093/nar/gkn865
Descripción
Sumario:Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu.

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