Minimotif miner 2nd release: a database and web system for motif search

Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function defin...

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Autores principales: Rajasekaran, Sanguthevar, Balla, Sudha, Gradie, Patrick, Gryk, Michael R., Kadaveru, Krishna, Kundeti, Vamsi, Maciejewski, Mark W., Mi, Tian, Rubino, Nicholas, Vyas, Jay, Schiller, Martin R.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686579/
https://www.ncbi.nlm.nih.gov/pubmed/18978024
http://dx.doi.org/10.1093/nar/gkn865
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author Rajasekaran, Sanguthevar
Balla, Sudha
Gradie, Patrick
Gryk, Michael R.
Kadaveru, Krishna
Kundeti, Vamsi
Maciejewski, Mark W.
Mi, Tian
Rubino, Nicholas
Vyas, Jay
Schiller, Martin R.
author_facet Rajasekaran, Sanguthevar
Balla, Sudha
Gradie, Patrick
Gryk, Michael R.
Kadaveru, Krishna
Kundeti, Vamsi
Maciejewski, Mark W.
Mi, Tian
Rubino, Nicholas
Vyas, Jay
Schiller, Martin R.
author_sort Rajasekaran, Sanguthevar
collection PubMed
description Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu.
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spelling pubmed-26865792009-06-15 Minimotif miner 2nd release: a database and web system for motif search Rajasekaran, Sanguthevar Balla, Sudha Gradie, Patrick Gryk, Michael R. Kadaveru, Krishna Kundeti, Vamsi Maciejewski, Mark W. Mi, Tian Rubino, Nicholas Vyas, Jay Schiller, Martin R. Nucleic Acids Res Articles Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu. Oxford University Press 2009-01 2008-10-31 /pmc/articles/PMC2686579/ /pubmed/18978024 http://dx.doi.org/10.1093/nar/gkn865 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Rajasekaran, Sanguthevar
Balla, Sudha
Gradie, Patrick
Gryk, Michael R.
Kadaveru, Krishna
Kundeti, Vamsi
Maciejewski, Mark W.
Mi, Tian
Rubino, Nicholas
Vyas, Jay
Schiller, Martin R.
Minimotif miner 2nd release: a database and web system for motif search
title Minimotif miner 2nd release: a database and web system for motif search
title_full Minimotif miner 2nd release: a database and web system for motif search
title_fullStr Minimotif miner 2nd release: a database and web system for motif search
title_full_unstemmed Minimotif miner 2nd release: a database and web system for motif search
title_short Minimotif miner 2nd release: a database and web system for motif search
title_sort minimotif miner 2nd release: a database and web system for motif search
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686579/
https://www.ncbi.nlm.nih.gov/pubmed/18978024
http://dx.doi.org/10.1093/nar/gkn865
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