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ARDB—Antibiotic Resistance Genes Database

The treatment of infections is increasingly compromised by the ability of bacteria to develop resistance to antibiotics through mutations or through the acquisition of resistance genes. Antibiotic resistance genes also have the potential to be used for bio-terror purposes through genetically modifie...

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Detalles Bibliográficos
Autores principales: Liu, Bo, Pop, Mihai
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686595/
https://www.ncbi.nlm.nih.gov/pubmed/18832362
http://dx.doi.org/10.1093/nar/gkn656
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author Liu, Bo
Pop, Mihai
author_facet Liu, Bo
Pop, Mihai
author_sort Liu, Bo
collection PubMed
description The treatment of infections is increasingly compromised by the ability of bacteria to develop resistance to antibiotics through mutations or through the acquisition of resistance genes. Antibiotic resistance genes also have the potential to be used for bio-terror purposes through genetically modified organisms. In order to facilitate the identification and characterization of these genes, we have created a manually curated database—the Antibiotic Resistance Genes Database (ARDB)—unifying most of the publicly available information on antibiotic resistance. Each gene and resistance type is annotated with rich information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. Our database also supports sequence similarity searches and implements an initial version of a tool for characterizing common mutations that confer antibiotic resistance. The information we provide can be used as compendium of antibiotic resistance factors as well as to identify the resistance genes of newly sequenced genes, genomes, or metagenomes. Currently, ARDB contains resistance information for 13 293 genes, 377 types, 257 antibiotics, 632 genomes, 933 species and 124 genera. ARDB is available at http://ardb.cbcb.umd.edu/.
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spelling pubmed-26865952009-05-26 ARDB—Antibiotic Resistance Genes Database Liu, Bo Pop, Mihai Nucleic Acids Res Articles The treatment of infections is increasingly compromised by the ability of bacteria to develop resistance to antibiotics through mutations or through the acquisition of resistance genes. Antibiotic resistance genes also have the potential to be used for bio-terror purposes through genetically modified organisms. In order to facilitate the identification and characterization of these genes, we have created a manually curated database—the Antibiotic Resistance Genes Database (ARDB)—unifying most of the publicly available information on antibiotic resistance. Each gene and resistance type is annotated with rich information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. Our database also supports sequence similarity searches and implements an initial version of a tool for characterizing common mutations that confer antibiotic resistance. The information we provide can be used as compendium of antibiotic resistance factors as well as to identify the resistance genes of newly sequenced genes, genomes, or metagenomes. Currently, ARDB contains resistance information for 13 293 genes, 377 types, 257 antibiotics, 632 genomes, 933 species and 124 genera. ARDB is available at http://ardb.cbcb.umd.edu/. Oxford University Press 2009-01 2008-10-02 /pmc/articles/PMC2686595/ /pubmed/18832362 http://dx.doi.org/10.1093/nar/gkn656 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Liu, Bo
Pop, Mihai
ARDB—Antibiotic Resistance Genes Database
title ARDB—Antibiotic Resistance Genes Database
title_full ARDB—Antibiotic Resistance Genes Database
title_fullStr ARDB—Antibiotic Resistance Genes Database
title_full_unstemmed ARDB—Antibiotic Resistance Genes Database
title_short ARDB—Antibiotic Resistance Genes Database
title_sort ardb—antibiotic resistance genes database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686595/
https://www.ncbi.nlm.nih.gov/pubmed/18832362
http://dx.doi.org/10.1093/nar/gkn656
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