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The IMGT/HLA database

It is 10 years since the IMGT/HLA database was released, providing the HLA community with a searchable repository of highly curated HLA sequences. The HLA complex is located within the 6p21.3 region of human chromosome 6 and contains more than 220 genes of diverse function. Many of the genes encode...

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Autores principales: Robinson, James, Waller, Matthew J., Fail, Sylvie C., McWilliam, Hamish, Lopez, Rodrigo, Parham, Peter, Marsh, Steven G. E.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686596/
https://www.ncbi.nlm.nih.gov/pubmed/18838392
http://dx.doi.org/10.1093/nar/gkn662
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author Robinson, James
Waller, Matthew J.
Fail, Sylvie C.
McWilliam, Hamish
Lopez, Rodrigo
Parham, Peter
Marsh, Steven G. E.
author_facet Robinson, James
Waller, Matthew J.
Fail, Sylvie C.
McWilliam, Hamish
Lopez, Rodrigo
Parham, Peter
Marsh, Steven G. E.
author_sort Robinson, James
collection PubMed
description It is 10 years since the IMGT/HLA database was released, providing the HLA community with a searchable repository of highly curated HLA sequences. The HLA complex is located within the 6p21.3 region of human chromosome 6 and contains more than 220 genes of diverse function. Many of the genes encode proteins of the immune system and are highly polymorphic. The naming of these HLA genes and alleles, and their quality control is the responsibility of the WHO Nomenclature Committee for Factors of the HLA System. Through the work of the HLA Informatics Group and in collaboration with the European Bioinformatics Institute, we are able to provide public access to this data through the website http://www.ebi.ac.uk/imgt/hla/. The first release contained 964 sequences, the most recent release 3300 sequences, with around 450 new sequences been added each year. The tools provided on the website have been updated to allow more complex alignments, which include genomic sequence data, as well as the development of tools for probe and primer design and the inclusion of data from the HLA Dictionary. Regular updates to the website ensure that new and confirmatory sequences are dispersed to the HLA community, and the wider research and clinical communities.
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spelling pubmed-26865962009-05-26 The IMGT/HLA database Robinson, James Waller, Matthew J. Fail, Sylvie C. McWilliam, Hamish Lopez, Rodrigo Parham, Peter Marsh, Steven G. E. Nucleic Acids Res Articles It is 10 years since the IMGT/HLA database was released, providing the HLA community with a searchable repository of highly curated HLA sequences. The HLA complex is located within the 6p21.3 region of human chromosome 6 and contains more than 220 genes of diverse function. Many of the genes encode proteins of the immune system and are highly polymorphic. The naming of these HLA genes and alleles, and their quality control is the responsibility of the WHO Nomenclature Committee for Factors of the HLA System. Through the work of the HLA Informatics Group and in collaboration with the European Bioinformatics Institute, we are able to provide public access to this data through the website http://www.ebi.ac.uk/imgt/hla/. The first release contained 964 sequences, the most recent release 3300 sequences, with around 450 new sequences been added each year. The tools provided on the website have been updated to allow more complex alignments, which include genomic sequence data, as well as the development of tools for probe and primer design and the inclusion of data from the HLA Dictionary. Regular updates to the website ensure that new and confirmatory sequences are dispersed to the HLA community, and the wider research and clinical communities. Oxford University Press 2009-01 2008-10-05 /pmc/articles/PMC2686596/ /pubmed/18838392 http://dx.doi.org/10.1093/nar/gkn662 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Robinson, James
Waller, Matthew J.
Fail, Sylvie C.
McWilliam, Hamish
Lopez, Rodrigo
Parham, Peter
Marsh, Steven G. E.
The IMGT/HLA database
title The IMGT/HLA database
title_full The IMGT/HLA database
title_fullStr The IMGT/HLA database
title_full_unstemmed The IMGT/HLA database
title_short The IMGT/HLA database
title_sort imgt/hla database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686596/
https://www.ncbi.nlm.nih.gov/pubmed/18838392
http://dx.doi.org/10.1093/nar/gkn662
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