The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5'-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbat...

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Detalles Bibliográficos
Autores principales: Kawaji, Hideya, Severin, Jessica, Lizio, Marina, Waterhouse, Andrew, Katayama, Shintaro, Irvine, Katharine M, Hume, David A, Forrest, Alistair RR, Suzuki, Harukazu, Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688931/
https://www.ncbi.nlm.nih.gov/pubmed/19374775
http://dx.doi.org/10.1186/gb-2009-10-4-r40
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author Kawaji, Hideya
Severin, Jessica
Lizio, Marina
Waterhouse, Andrew
Katayama, Shintaro
Irvine, Katharine M
Hume, David A
Forrest, Alistair RR
Suzuki, Harukazu
Carninci, Piero
Hayashizaki, Yoshihide
Daub, Carsten O
author_facet Kawaji, Hideya
Severin, Jessica
Lizio, Marina
Waterhouse, Andrew
Katayama, Shintaro
Irvine, Katharine M
Hume, David A
Forrest, Alistair RR
Suzuki, Harukazu
Carninci, Piero
Hayashizaki, Yoshihide
Daub, Carsten O
author_sort Kawaji, Hideya
collection PubMed
description In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5'-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbations. In addition, data regarding chromatin status derived from ChIP-chip to elucidate the transcriptional regulatory interactions are included. Here we present these data to the research community as an integrated web resource.
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spelling pubmed-26889312009-06-02 The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation Kawaji, Hideya Severin, Jessica Lizio, Marina Waterhouse, Andrew Katayama, Shintaro Irvine, Katharine M Hume, David A Forrest, Alistair RR Suzuki, Harukazu Carninci, Piero Hayashizaki, Yoshihide Daub, Carsten O Genome Biol Method In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5'-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbations. In addition, data regarding chromatin status derived from ChIP-chip to elucidate the transcriptional regulatory interactions are included. Here we present these data to the research community as an integrated web resource. BioMed Central 2009 2009-04-19 /pmc/articles/PMC2688931/ /pubmed/19374775 http://dx.doi.org/10.1186/gb-2009-10-4-r40 Text en Copyright © 2009 Kawaji et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Method
Kawaji, Hideya
Severin, Jessica
Lizio, Marina
Waterhouse, Andrew
Katayama, Shintaro
Irvine, Katharine M
Hume, David A
Forrest, Alistair RR
Suzuki, Harukazu
Carninci, Piero
Hayashizaki, Yoshihide
Daub, Carsten O
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
title The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
title_full The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
title_fullStr The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
title_full_unstemmed The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
title_short The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
title_sort fantom web resource: from mammalian transcriptional landscape to its dynamic regulation
topic Method
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688931/
https://www.ncbi.nlm.nih.gov/pubmed/19374775
http://dx.doi.org/10.1186/gb-2009-10-4-r40
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