Cargando…

An efficient variance component approach implementing an average information REML suitable for combined LD and linkage mapping with a general complex pedigree

Variance component (VC) approaches based on restricted maximum likelihood (REML) have been used as an attractive method for positioning of quantitative trait loci (QTL). Linkage disequilibrium (LD) information can be easily implemented in the covariance structure among QTL effects (e.g. genotype rel...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lee, Sang Hong, Werf, Julius HJ van der
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2005
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689296/ https://www.ncbi.nlm.nih.gov/pubmed/16451790 http://dx.doi.org/10.1186/1297-9686-38-1-25

Ejemplares similares

Computing approximate standard errors for genetic parameters derived from random regression models fitted by average information REML
por: Fischer, Troy M, et al.
Publicado: (2004)

A reparameterization to improve numerical optimization in multivariate REML (co)variance component estimation
por: Groeneveld, E
Publicado: (1994)

Simultaneous fine mapping of closely linked epistatic quantitative trait loci using combined linkage disequilibrium and linkage with a general pedigree
por: Lee, Sang Hong, et al.
Publicado: (2008)

Efficient ReML inference in variance component mixed models using a Min-Max algorithm
por: Laporte, Fabien, et al.
Publicado: (2022)

A variance component analysis on recombination rate in the COGA pedigrees
por: Wang, Lin, et al.
Publicado: (2005)

The efficiency of designs for fine-mapping of quantitative trait loci using combined linkage disequilibrium and linkage
por: Lee, Sang Hong, et al.
Publicado: (2004)

A comparison of principal component regression and genomic REML for genomic prediction across populations
por: Dadousis, Christos, et al.
Publicado: (2014)

Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits
por: Lee, Sang Hong, et al.
Publicado: (2010)

Distinct Linkage Disequilibrium (LD) Runs of Single Nucleotide Polymorphisms and Microsatellite Markers; Implications for Use of Mixed Marker Haplotypes in LD-based Mapping
por: Lee, Kyung-A, et al.
Publicado: (2007)

Using an evolutionary algorithm and parallel computing for haplotyping in a general complex pedigree with multiple marker loci
por: Lee, Sang Hong, et al.
Publicado: (2008)

quickLD: An efficient software for linkage disequilibrium analyses
por: Theodoris, Charalampos, et al.
Publicado: (2021)

Including endophenotypes as covariates in variance component heritability and linkage analysis
por: Bailey, Julia N
Publicado: (2005)

LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium
por: Bush, William S, et al.
Publicado: (2009)

Quantitative trait locus analysis of hybrid pedigrees: variance-components model, inbreeding parameter, and power
por: Svischeva, Gulnara R
Publicado: (2007)

Variance components of sex determination in the copepod Tigriopus californicus estimated from a pedigree analysis
por: Richardson, Jean M. L., et al.
Publicado: (2023)

Copula miss-specification in REML multivariate genetic animal model estimation
por: Rohmer, Tom, et al.
Publicado: (2022)

DistiLD Database: diseases and traits in linkage disequilibrium blocks
por: Pallejà, Albert, et al.
Publicado: (2012)

ArchiLD: Hierarchical Visualization of Linkage Disequilibrium in Human Populations
por: Melchiotti, Rossella, et al.
Publicado: (2014)

Contribution of genetic effects to genetic variance components with epistasis and linkage disequilibrium
por: Wang, Tao, et al.
Publicado: (2009)

The effect of linkage disequilibrium on linkage analysis of incomplete pedigrees
por: Levinson, Douglas F, et al.
Publicado: (2005)

An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis
por: Cubry, Philippe, et al.
Publicado: (2013)

Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus
por: Bush, William S., et al.
Publicado: (2010)

EM-REML estimation of covariance parameters in Gaussian mixed models for longitudinal data analysis
por: Foulley, Jean-Louis, et al.
Publicado: (2000)

THI Modulation of Genetic and Non-genetic Variance Components for Carcass Traits in Hanwoo Cattle
por: Chung, Yoonji, et al.
Publicado: (2020)

Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology
por: Rowe, Suzanne J, et al.
Publicado: (2009)

eLD: entropy-based linkage disequilibrium index between multiallelic sites
por: Okada, Yukinori
Publicado: (2018)

Genome-wide linkage in Utah autism pedigrees
por: Allen-Brady, K, et al.
Publicado: (2009)

Variance components linkage analysis for adjusted systolic blood pressure in the Framingham Heart Study
por: Byng, Martyn C, et al.
Publicado: (2003)

Components of variance
por: Cox, D R, et al.
Publicado: (2002)

Variance Components
por: Searle, Shayle R, et al.
Publicado: (1992)

Variance components /
por: Searle, S. R. (Shayle R.), 1928-
Publicado: (1992)

New score tests for age-at-onset linkage analysis in general pedigrees
por: Callegaro, Andrea, et al.
Publicado: (2009)

A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation
por: Hickey, John M, et al.
Publicado: (2012)

LD(2)SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs
por: Chang, Hsueh-Wei, et al.
Publicado: (2009)

ContamLD: estimation of ancient nuclear DNA contamination using breakdown of linkage disequilibrium
por: Nakatsuka, Nathan, et al.
Publicado: (2020)

Linkage and association analysis in pedigrees from different populations
por: Beyene, Joseph, et al.
Publicado: (2005)

Assessment of SNPs for linkage mapping in Eucalyptus: construction of a consensus SNP/microsatellite map from two unrelated pedigrees
por: Lima, Bruno Marco, et al.
Publicado: (2011)

hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups
por: Ferdosi, Mohammad H, et al.
Publicado: (2014)

Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation
por: Daetwyler, Hans D, et al.
Publicado: (2012)

Random effects meta‐analysis: Coverage performance of 95% confidence and prediction intervals following REML estimation
por: Partlett, Christopher, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_ue2d2krkg9bfd7k9sk3ef2hmul