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Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals

BACKGROUND: oscillatory activity, which can be separated in background and oscillatory burst pattern activities, is supposed to be representative of local synchronies of neural assemblies. Oscillatory burst events should consequently play a specific functional role, distinct from background EEG acti...

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Autores principales: Vialatte, François B, Solé-Casals, Jordi, Dauwels, Justin, Maurice, Monique, Cichocki, Andrzej
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2690596/
https://www.ncbi.nlm.nih.gov/pubmed/19432999
http://dx.doi.org/10.1186/1471-2202-10-46
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author Vialatte, François B
Solé-Casals, Jordi
Dauwels, Justin
Maurice, Monique
Cichocki, Andrzej
author_facet Vialatte, François B
Solé-Casals, Jordi
Dauwels, Justin
Maurice, Monique
Cichocki, Andrzej
author_sort Vialatte, François B
collection PubMed
description BACKGROUND: oscillatory activity, which can be separated in background and oscillatory burst pattern activities, is supposed to be representative of local synchronies of neural assemblies. Oscillatory burst events should consequently play a specific functional role, distinct from background EEG activity – especially for cognitive tasks (e.g. working memory tasks), binding mechanisms and perceptual dynamics (e.g. visual binding), or in clinical contexts (e.g. effects of brain disorders). However extracting oscillatory events in single trials, with a reliable and consistent method, is not a simple task. RESULTS: in this work we propose a user-friendly stand-alone toolbox, which models in a reasonable time a bump time-frequency model from the wavelet representations of a set of signals. The software is provided with a Matlab toolbox which can compute wavelet representations before calling automatically the stand-alone application. CONCLUSION: The tool is publicly available as a freeware at the address:
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spelling pubmed-26905962009-06-04 Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals Vialatte, François B Solé-Casals, Jordi Dauwels, Justin Maurice, Monique Cichocki, Andrzej BMC Neurosci Software BACKGROUND: oscillatory activity, which can be separated in background and oscillatory burst pattern activities, is supposed to be representative of local synchronies of neural assemblies. Oscillatory burst events should consequently play a specific functional role, distinct from background EEG activity – especially for cognitive tasks (e.g. working memory tasks), binding mechanisms and perceptual dynamics (e.g. visual binding), or in clinical contexts (e.g. effects of brain disorders). However extracting oscillatory events in single trials, with a reliable and consistent method, is not a simple task. RESULTS: in this work we propose a user-friendly stand-alone toolbox, which models in a reasonable time a bump time-frequency model from the wavelet representations of a set of signals. The software is provided with a Matlab toolbox which can compute wavelet representations before calling automatically the stand-alone application. CONCLUSION: The tool is publicly available as a freeware at the address: BioMed Central 2009-05-12 /pmc/articles/PMC2690596/ /pubmed/19432999 http://dx.doi.org/10.1186/1471-2202-10-46 Text en Copyright © 2009 Vialatte et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Vialatte, François B
Solé-Casals, Jordi
Dauwels, Justin
Maurice, Monique
Cichocki, Andrzej
Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
title Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
title_full Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
title_fullStr Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
title_full_unstemmed Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
title_short Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
title_sort bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2690596/
https://www.ncbi.nlm.nih.gov/pubmed/19432999
http://dx.doi.org/10.1186/1471-2202-10-46
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