A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence

We present a gene-based RH map of the chicken microchromosome GGA14, known to have synteny conservations with human chromosomal regions HSA16p13.3 and HSA17p11.2. Microsatellite markers from the genetic map were used to check the validity of the RH map and additional markers were developed from chic...

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Autores principales: Morisson, Mireille, Leroux, Sophie, Jiguet-Jiglaire, Carine, Assaf, Sirine, Pitel, Frédérique, Lagarrigue, Sandrine, Bardes, Suzanne, Feve, Katia, Faraut, Thomas, Milan, Denis, Vignal, Alain
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2005
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697232/
https://www.ncbi.nlm.nih.gov/pubmed/16194526
http://dx.doi.org/10.1186/1297-9686-37-3-229
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author Morisson, Mireille
Leroux, Sophie
Jiguet-Jiglaire, Carine
Assaf, Sirine
Pitel, Frédérique
Lagarrigue, Sandrine
Bardes, Suzanne
Feve, Katia
Faraut, Thomas
Milan, Denis
Vignal, Alain
author_facet Morisson, Mireille
Leroux, Sophie
Jiguet-Jiglaire, Carine
Assaf, Sirine
Pitel, Frédérique
Lagarrigue, Sandrine
Bardes, Suzanne
Feve, Katia
Faraut, Thomas
Milan, Denis
Vignal, Alain
author_sort Morisson, Mireille
collection PubMed
description We present a gene-based RH map of the chicken microchromosome GGA14, known to have synteny conservations with human chromosomal regions HSA16p13.3 and HSA17p11.2. Microsatellite markers from the genetic map were used to check the validity of the RH map and additional markers were developed from chicken EST data to yield comparative mapping data. A high rate of intra-chromosomal rearrangements was detected by comparison to the assembled human sequence. Finally, the alignment of the RH map to the assembled chicken sequence showed a small number of discordances, most of which involved the same region of the chromosome spanning between 40.5 and 75.9 cR(6000 )on the RH map.
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spelling pubmed-26972322009-06-16 A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence Morisson, Mireille Leroux, Sophie Jiguet-Jiglaire, Carine Assaf, Sirine Pitel, Frédérique Lagarrigue, Sandrine Bardes, Suzanne Feve, Katia Faraut, Thomas Milan, Denis Vignal, Alain Genet Sel Evol Research We present a gene-based RH map of the chicken microchromosome GGA14, known to have synteny conservations with human chromosomal regions HSA16p13.3 and HSA17p11.2. Microsatellite markers from the genetic map were used to check the validity of the RH map and additional markers were developed from chicken EST data to yield comparative mapping data. A high rate of intra-chromosomal rearrangements was detected by comparison to the assembled human sequence. Finally, the alignment of the RH map to the assembled chicken sequence showed a small number of discordances, most of which involved the same region of the chromosome spanning between 40.5 and 75.9 cR(6000 )on the RH map. BioMed Central 2005-03-15 /pmc/articles/PMC2697232/ /pubmed/16194526 http://dx.doi.org/10.1186/1297-9686-37-3-229 Text en Copyright © 2005 INRA, EDP Sciences
spellingShingle Research
Morisson, Mireille
Leroux, Sophie
Jiguet-Jiglaire, Carine
Assaf, Sirine
Pitel, Frédérique
Lagarrigue, Sandrine
Bardes, Suzanne
Feve, Katia
Faraut, Thomas
Milan, Denis
Vignal, Alain
A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence
title A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence
title_full A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence
title_fullStr A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence
title_full_unstemmed A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence
title_short A gene-based radiation hybrid map of chicken microchromosome 14: Comparison to human and alignment to the assembled chicken sequence
title_sort gene-based radiation hybrid map of chicken microchromosome 14: comparison to human and alignment to the assembled chicken sequence
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697232/
https://www.ncbi.nlm.nih.gov/pubmed/16194526
http://dx.doi.org/10.1186/1297-9686-37-3-229
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