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Deuterium isotope effects on (15)N backbone chemical shifts in proteins
Quantum mechanical calculations are presented that predict that one-bond deuterium isotope effects on the (15)N chemical shift of backbone amides of proteins, (1)Δ(15)N(D), are sensitive to backbone conformation and hydrogen bonding. A quantitative empirical model for (1)Δ(15)N(D) including the back...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
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Springer Netherlands
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697368/ https://www.ncbi.nlm.nih.gov/pubmed/19455282 http://dx.doi.org/10.1007/s10858-009-9316-0 |
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author | Abildgaard, Jens Hansen, Poul Erik Manalo, Marlon N. LiWang, Andy |
author_facet | Abildgaard, Jens Hansen, Poul Erik Manalo, Marlon N. LiWang, Andy |
author_sort | Abildgaard, Jens |
collection | PubMed |
description | Quantum mechanical calculations are presented that predict that one-bond deuterium isotope effects on the (15)N chemical shift of backbone amides of proteins, (1)Δ(15)N(D), are sensitive to backbone conformation and hydrogen bonding. A quantitative empirical model for (1)Δ(15)N(D) including the backbone dihedral angles, Φ and Ψ, and the hydrogen bonding geometry is presented for glycine and amino acid residues with aliphatic side chains. The effect of hydrogen bonding is rationalized in part as an electric-field effect on the first derivative of the nuclear shielding with respect to N–H bond length. Another contributing factor is the effect of increased anharmonicity of the N–H stretching vibrational state upon hydrogen bonding, which results in an altered N–H/N–D equilibrium bond length ratio. The N–H stretching anharmonicity contribution falls off with the cosine of the N–H···O bond angle. For residues with uncharged side chains a very good prediction of isotope effects can be made. Thus, for proteins with known secondary structures, (1)Δ(15)N(D) can provide insights into hydrogen bonding geometries. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-009-9316-0) contains supplementary material, which is available to authorized users. |
format | Text |
id | pubmed-2697368 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-26973682009-06-17 Deuterium isotope effects on (15)N backbone chemical shifts in proteins Abildgaard, Jens Hansen, Poul Erik Manalo, Marlon N. LiWang, Andy J Biomol NMR Article Quantum mechanical calculations are presented that predict that one-bond deuterium isotope effects on the (15)N chemical shift of backbone amides of proteins, (1)Δ(15)N(D), are sensitive to backbone conformation and hydrogen bonding. A quantitative empirical model for (1)Δ(15)N(D) including the backbone dihedral angles, Φ and Ψ, and the hydrogen bonding geometry is presented for glycine and amino acid residues with aliphatic side chains. The effect of hydrogen bonding is rationalized in part as an electric-field effect on the first derivative of the nuclear shielding with respect to N–H bond length. Another contributing factor is the effect of increased anharmonicity of the N–H stretching vibrational state upon hydrogen bonding, which results in an altered N–H/N–D equilibrium bond length ratio. The N–H stretching anharmonicity contribution falls off with the cosine of the N–H···O bond angle. For residues with uncharged side chains a very good prediction of isotope effects can be made. Thus, for proteins with known secondary structures, (1)Δ(15)N(D) can provide insights into hydrogen bonding geometries. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-009-9316-0) contains supplementary material, which is available to authorized users. Springer Netherlands 2009-05-20 2009-07 /pmc/articles/PMC2697368/ /pubmed/19455282 http://dx.doi.org/10.1007/s10858-009-9316-0 Text en © The Author(s) 2009 |
spellingShingle | Article Abildgaard, Jens Hansen, Poul Erik Manalo, Marlon N. LiWang, Andy Deuterium isotope effects on (15)N backbone chemical shifts in proteins |
title | Deuterium isotope effects on (15)N backbone chemical shifts in proteins |
title_full | Deuterium isotope effects on (15)N backbone chemical shifts in proteins |
title_fullStr | Deuterium isotope effects on (15)N backbone chemical shifts in proteins |
title_full_unstemmed | Deuterium isotope effects on (15)N backbone chemical shifts in proteins |
title_short | Deuterium isotope effects on (15)N backbone chemical shifts in proteins |
title_sort | deuterium isotope effects on (15)n backbone chemical shifts in proteins |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697368/ https://www.ncbi.nlm.nih.gov/pubmed/19455282 http://dx.doi.org/10.1007/s10858-009-9316-0 |
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