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Comparative Analyses of Plant Transcription Factor Databases

Transcription factors (TFs) are proteinaceous complex, which bind to the promoter regions in the DNA and affect transcription initiation. Plant TFs control gene expressions and genes control many physiological processes, which in turn trigger cascades of biochemical reactions in plant cells. The dat...

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Detalles Bibliográficos
Autores principales: Ramirez, Silvia R, Basu, Chhandak
Formato: Texto
Lenguaje:English
Publicado: Bentham Science Publishers Ltd 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2699837/
https://www.ncbi.nlm.nih.gov/pubmed/19721806
http://dx.doi.org/10.2174/138920209787581253
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author Ramirez, Silvia R
Basu, Chhandak
author_facet Ramirez, Silvia R
Basu, Chhandak
author_sort Ramirez, Silvia R
collection PubMed
description Transcription factors (TFs) are proteinaceous complex, which bind to the promoter regions in the DNA and affect transcription initiation. Plant TFs control gene expressions and genes control many physiological processes, which in turn trigger cascades of biochemical reactions in plant cells. The databases available for plant TFs are somewhat abundant but all convey different information and in different formats. Some of the publicly available plant TF databases may be narrow, while others are broad in scopes. For example, some of the best TF databases are ones that are very specific with just one plant species, but there are also other databases that contain a total of up to 20 different plant species. In this review plant TF databases ranging from a single species to many will be assessed and described. The comparative analyses of all the databases and their advantages and disadvantages are also discussed.
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spelling pubmed-26998372009-09-01 Comparative Analyses of Plant Transcription Factor Databases Ramirez, Silvia R Basu, Chhandak Curr Genomics Article Transcription factors (TFs) are proteinaceous complex, which bind to the promoter regions in the DNA and affect transcription initiation. Plant TFs control gene expressions and genes control many physiological processes, which in turn trigger cascades of biochemical reactions in plant cells. The databases available for plant TFs are somewhat abundant but all convey different information and in different formats. Some of the publicly available plant TF databases may be narrow, while others are broad in scopes. For example, some of the best TF databases are ones that are very specific with just one plant species, but there are also other databases that contain a total of up to 20 different plant species. In this review plant TF databases ranging from a single species to many will be assessed and described. The comparative analyses of all the databases and their advantages and disadvantages are also discussed. Bentham Science Publishers Ltd 2009-03 /pmc/articles/PMC2699837/ /pubmed/19721806 http://dx.doi.org/10.2174/138920209787581253 Text en ©2009 Bentham Science Publishers Ltd. http://creativecommons.org/licenses/by/2.5/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.5/) which permits unrestrictive use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Article
Ramirez, Silvia R
Basu, Chhandak
Comparative Analyses of Plant Transcription Factor Databases
title Comparative Analyses of Plant Transcription Factor Databases
title_full Comparative Analyses of Plant Transcription Factor Databases
title_fullStr Comparative Analyses of Plant Transcription Factor Databases
title_full_unstemmed Comparative Analyses of Plant Transcription Factor Databases
title_short Comparative Analyses of Plant Transcription Factor Databases
title_sort comparative analyses of plant transcription factor databases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2699837/
https://www.ncbi.nlm.nih.gov/pubmed/19721806
http://dx.doi.org/10.2174/138920209787581253
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