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WebLab: a data-centric, knowledge-sharing bioinformatic platform

With the rapid progress of biological research, great demands are proposed for integrative knowledge-sharing systems to efficiently support collaboration of biological researchers from various fields. To fulfill such requirements, we have developed a data-centric knowledge-sharing platform WebLab fo...

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Detalles Bibliográficos
Autores principales: Liu, Xiaoqiao, Wu, Jianmin, Wang, Jun, Liu, Xiaochuan, Zhao, Shuqi, Li, Zhe, Kong, Lei, Gu, Xiaocheng, Luo, Jingchu, Gao, Ge
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703900/
https://www.ncbi.nlm.nih.gov/pubmed/19465388
http://dx.doi.org/10.1093/nar/gkp428
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author Liu, Xiaoqiao
Wu, Jianmin
Wang, Jun
Liu, Xiaochuan
Zhao, Shuqi
Li, Zhe
Kong, Lei
Gu, Xiaocheng
Luo, Jingchu
Gao, Ge
author_facet Liu, Xiaoqiao
Wu, Jianmin
Wang, Jun
Liu, Xiaochuan
Zhao, Shuqi
Li, Zhe
Kong, Lei
Gu, Xiaocheng
Luo, Jingchu
Gao, Ge
author_sort Liu, Xiaoqiao
collection PubMed
description With the rapid progress of biological research, great demands are proposed for integrative knowledge-sharing systems to efficiently support collaboration of biological researchers from various fields. To fulfill such requirements, we have developed a data-centric knowledge-sharing platform WebLab for biologists to fetch, analyze, manipulate and share data under an intuitive web interface. Dedicated space is provided for users to store their input data and analysis results. Users can upload local data or fetch public data from remote databases, and then perform analysis using more than 260 integrated bioinformatic tools. These tools can be further organized as customized analysis workflows to accomplish complex tasks automatically. In addition to conventional biological data, WebLab also provides rich supports for scientific literatures, such as searching against full text of uploaded literatures and exporting citations into various well-known citation managers such as EndNote and BibTex. To facilitate team work among colleagues, WebLab provides a powerful and flexible sharing mechanism, which allows users to share input data, analysis results, scientific literatures and customized workflows to specified users or groups with sophisticated privilege settings. WebLab is publicly available at http://weblab.cbi.pku.edu.cn, with all source code released as Free Software.
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spelling pubmed-27039002009-07-01 WebLab: a data-centric, knowledge-sharing bioinformatic platform Liu, Xiaoqiao Wu, Jianmin Wang, Jun Liu, Xiaochuan Zhao, Shuqi Li, Zhe Kong, Lei Gu, Xiaocheng Luo, Jingchu Gao, Ge Nucleic Acids Res Articles With the rapid progress of biological research, great demands are proposed for integrative knowledge-sharing systems to efficiently support collaboration of biological researchers from various fields. To fulfill such requirements, we have developed a data-centric knowledge-sharing platform WebLab for biologists to fetch, analyze, manipulate and share data under an intuitive web interface. Dedicated space is provided for users to store their input data and analysis results. Users can upload local data or fetch public data from remote databases, and then perform analysis using more than 260 integrated bioinformatic tools. These tools can be further organized as customized analysis workflows to accomplish complex tasks automatically. In addition to conventional biological data, WebLab also provides rich supports for scientific literatures, such as searching against full text of uploaded literatures and exporting citations into various well-known citation managers such as EndNote and BibTex. To facilitate team work among colleagues, WebLab provides a powerful and flexible sharing mechanism, which allows users to share input data, analysis results, scientific literatures and customized workflows to specified users or groups with sophisticated privilege settings. WebLab is publicly available at http://weblab.cbi.pku.edu.cn, with all source code released as Free Software. Oxford University Press 2009-07-01 2009-05-22 /pmc/articles/PMC2703900/ /pubmed/19465388 http://dx.doi.org/10.1093/nar/gkp428 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Liu, Xiaoqiao
Wu, Jianmin
Wang, Jun
Liu, Xiaochuan
Zhao, Shuqi
Li, Zhe
Kong, Lei
Gu, Xiaocheng
Luo, Jingchu
Gao, Ge
WebLab: a data-centric, knowledge-sharing bioinformatic platform
title WebLab: a data-centric, knowledge-sharing bioinformatic platform
title_full WebLab: a data-centric, knowledge-sharing bioinformatic platform
title_fullStr WebLab: a data-centric, knowledge-sharing bioinformatic platform
title_full_unstemmed WebLab: a data-centric, knowledge-sharing bioinformatic platform
title_short WebLab: a data-centric, knowledge-sharing bioinformatic platform
title_sort weblab: a data-centric, knowledge-sharing bioinformatic platform
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703900/
https://www.ncbi.nlm.nih.gov/pubmed/19465388
http://dx.doi.org/10.1093/nar/gkp428
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