NNcon: improved protein contact map prediction using 2D-recursive neural networks

Protein contact map prediction is useful for protein folding rate prediction, model selection and 3D structure prediction. Here we describe NNcon, a fast and reliable contact map prediction server and software. NNcon was ranked among the most accurate residue contact predictors in the Eighth Critica...

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Detalles Bibliográficos
Autores principales: Tegge, Allison N., Wang, Zheng, Eickholt, Jesse, Cheng, Jianlin
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703959/
https://www.ncbi.nlm.nih.gov/pubmed/19420062
http://dx.doi.org/10.1093/nar/gkp305
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author Tegge, Allison N.
Wang, Zheng
Eickholt, Jesse
Cheng, Jianlin
author_facet Tegge, Allison N.
Wang, Zheng
Eickholt, Jesse
Cheng, Jianlin
author_sort Tegge, Allison N.
collection PubMed
description Protein contact map prediction is useful for protein folding rate prediction, model selection and 3D structure prediction. Here we describe NNcon, a fast and reliable contact map prediction server and software. NNcon was ranked among the most accurate residue contact predictors in the Eighth Critical Assessment of Techniques for Protein Structure Prediction (CASP8), 2008. Both NNcon server and software are available at http://casp.rnet.missouri.edu/nncon.html.
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spelling pubmed-27039592009-07-01 NNcon: improved protein contact map prediction using 2D-recursive neural networks Tegge, Allison N. Wang, Zheng Eickholt, Jesse Cheng, Jianlin Nucleic Acids Res Articles Protein contact map prediction is useful for protein folding rate prediction, model selection and 3D structure prediction. Here we describe NNcon, a fast and reliable contact map prediction server and software. NNcon was ranked among the most accurate residue contact predictors in the Eighth Critical Assessment of Techniques for Protein Structure Prediction (CASP8), 2008. Both NNcon server and software are available at http://casp.rnet.missouri.edu/nncon.html. Oxford University Press 2009-07-01 2009-05-06 /pmc/articles/PMC2703959/ /pubmed/19420062 http://dx.doi.org/10.1093/nar/gkp305 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Tegge, Allison N.
Wang, Zheng
Eickholt, Jesse
Cheng, Jianlin
NNcon: improved protein contact map prediction using 2D-recursive neural networks
title NNcon: improved protein contact map prediction using 2D-recursive neural networks
title_full NNcon: improved protein contact map prediction using 2D-recursive neural networks
title_fullStr NNcon: improved protein contact map prediction using 2D-recursive neural networks
title_full_unstemmed NNcon: improved protein contact map prediction using 2D-recursive neural networks
title_short NNcon: improved protein contact map prediction using 2D-recursive neural networks
title_sort nncon: improved protein contact map prediction using 2d-recursive neural networks
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703959/
https://www.ncbi.nlm.nih.gov/pubmed/19420062
http://dx.doi.org/10.1093/nar/gkp305
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AT eickholtjesse nnconimprovedproteincontactmappredictionusing2drecursiveneuralnetworks
AT chengjianlin nnconimprovedproteincontactmappredictionusing2drecursiveneuralnetworks

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