Cargando…

OmicBrowse: a Flash-based high-performance graphics interface for genomic resources

OmicBrowse is a genome browser designed as a scalable system for maintaining numerous genome annotation datasets. It is an open source tool capable of regulating multiple user data access to each dataset to allow multiple users to have their own integrative view of both their unpublished and publish...

Descripción completa

Detalles Bibliográficos
Autores principales: Matsushima, Akihiro, Kobayashi, Norio, Mochizuki, Yoshiki, Ishii, Manabu, Kawaguchi, Shuji, Endo, Takaho A., Umetsu, Ryo, Makita, Yuko, Toyoda, Tetsuro
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703975/
https://www.ncbi.nlm.nih.gov/pubmed/19528066
http://dx.doi.org/10.1093/nar/gkp404
_version_ 1782168898630582272
author Matsushima, Akihiro
Kobayashi, Norio
Mochizuki, Yoshiki
Ishii, Manabu
Kawaguchi, Shuji
Endo, Takaho A.
Umetsu, Ryo
Makita, Yuko
Toyoda, Tetsuro
author_facet Matsushima, Akihiro
Kobayashi, Norio
Mochizuki, Yoshiki
Ishii, Manabu
Kawaguchi, Shuji
Endo, Takaho A.
Umetsu, Ryo
Makita, Yuko
Toyoda, Tetsuro
author_sort Matsushima, Akihiro
collection PubMed
description OmicBrowse is a genome browser designed as a scalable system for maintaining numerous genome annotation datasets. It is an open source tool capable of regulating multiple user data access to each dataset to allow multiple users to have their own integrative view of both their unpublished and published datasets, so that the maintenance costs related to supplying each collaborator exclusively with their own private data are significantly reduced. OmicBrowse supports DAS1 imports and exports of annotations to Internet site servers worldwide. We also provide a data-download named OmicDownload server that interactively selects datasets and filters the data on the selected datasets. Our OmicBrowse server has been freely available at http://omicspace.riken.jp/ since its launch in 2003. The OmicBrowse source code is downloadable from http://sourceforge.net/projects/omicbrowse/.
format Text
id pubmed-2703975
institution National Center for Biotechnology Information
language English
publishDate 2009
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-27039752009-07-01 OmicBrowse: a Flash-based high-performance graphics interface for genomic resources Matsushima, Akihiro Kobayashi, Norio Mochizuki, Yoshiki Ishii, Manabu Kawaguchi, Shuji Endo, Takaho A. Umetsu, Ryo Makita, Yuko Toyoda, Tetsuro Nucleic Acids Res Articles OmicBrowse is a genome browser designed as a scalable system for maintaining numerous genome annotation datasets. It is an open source tool capable of regulating multiple user data access to each dataset to allow multiple users to have their own integrative view of both their unpublished and published datasets, so that the maintenance costs related to supplying each collaborator exclusively with their own private data are significantly reduced. OmicBrowse supports DAS1 imports and exports of annotations to Internet site servers worldwide. We also provide a data-download named OmicDownload server that interactively selects datasets and filters the data on the selected datasets. Our OmicBrowse server has been freely available at http://omicspace.riken.jp/ since its launch in 2003. The OmicBrowse source code is downloadable from http://sourceforge.net/projects/omicbrowse/. Oxford University Press 2009-07-01 2009-06-15 /pmc/articles/PMC2703975/ /pubmed/19528066 http://dx.doi.org/10.1093/nar/gkp404 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Matsushima, Akihiro
Kobayashi, Norio
Mochizuki, Yoshiki
Ishii, Manabu
Kawaguchi, Shuji
Endo, Takaho A.
Umetsu, Ryo
Makita, Yuko
Toyoda, Tetsuro
OmicBrowse: a Flash-based high-performance graphics interface for genomic resources
title OmicBrowse: a Flash-based high-performance graphics interface for genomic resources
title_full OmicBrowse: a Flash-based high-performance graphics interface for genomic resources
title_fullStr OmicBrowse: a Flash-based high-performance graphics interface for genomic resources
title_full_unstemmed OmicBrowse: a Flash-based high-performance graphics interface for genomic resources
title_short OmicBrowse: a Flash-based high-performance graphics interface for genomic resources
title_sort omicbrowse: a flash-based high-performance graphics interface for genomic resources
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703975/
https://www.ncbi.nlm.nih.gov/pubmed/19528066
http://dx.doi.org/10.1093/nar/gkp404
work_keys_str_mv AT matsushimaakihiro omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT kobayashinorio omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT mochizukiyoshiki omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT ishiimanabu omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT kawaguchishuji omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT endotakahoa omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT umetsuryo omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT makitayuko omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources
AT toyodatetsuro omicbrowseaflashbasedhighperformancegraphicsinterfaceforgenomicresources