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Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks

Attribution of biological robustness to the specific structural properties of a regulatory network is an important yet unsolved problem in systems biology. It is widely believed that the topological characteristics of a biological control network largely determine its dynamic behavior, yet the actua...

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Detalles Bibliográficos
Autores principales: Wu, Yangle, Zhang, Xiaomeng, Yu, Jianglei, Ouyang, Qi
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704863/
https://www.ncbi.nlm.nih.gov/pubmed/19629157
http://dx.doi.org/10.1371/journal.pcbi.1000442
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author Wu, Yangle
Zhang, Xiaomeng
Yu, Jianglei
Ouyang, Qi
author_facet Wu, Yangle
Zhang, Xiaomeng
Yu, Jianglei
Ouyang, Qi
author_sort Wu, Yangle
collection PubMed
description Attribution of biological robustness to the specific structural properties of a regulatory network is an important yet unsolved problem in systems biology. It is widely believed that the topological characteristics of a biological control network largely determine its dynamic behavior, yet the actual mechanism is still poorly understood. Here, we define a novel structural feature of biological networks, termed ‘regulation entropy’, to quantitatively assess the influence of network topology on the robustness of the systems. Using the cell-cycle control networks of the budding yeast (Saccharomyces cerevisiae) and the fission yeast (Schizosaccharomyces pombe) as examples, we first demonstrate the correlation of this quantity with the dynamic stability of biological control networks, and then we establish a significant association between this quantity and the structural stability of the networks. And we further substantiate the generality of this approach with a broad spectrum of biological and random networks. We conclude that the regulation entropy is an effective order parameter in evaluating the robustness of biological control networks. Our work suggests a novel connection between the topological feature and the dynamic property of biological regulatory networks.
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spelling pubmed-27048632009-07-24 Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks Wu, Yangle Zhang, Xiaomeng Yu, Jianglei Ouyang, Qi PLoS Comput Biol Research Article Attribution of biological robustness to the specific structural properties of a regulatory network is an important yet unsolved problem in systems biology. It is widely believed that the topological characteristics of a biological control network largely determine its dynamic behavior, yet the actual mechanism is still poorly understood. Here, we define a novel structural feature of biological networks, termed ‘regulation entropy’, to quantitatively assess the influence of network topology on the robustness of the systems. Using the cell-cycle control networks of the budding yeast (Saccharomyces cerevisiae) and the fission yeast (Schizosaccharomyces pombe) as examples, we first demonstrate the correlation of this quantity with the dynamic stability of biological control networks, and then we establish a significant association between this quantity and the structural stability of the networks. And we further substantiate the generality of this approach with a broad spectrum of biological and random networks. We conclude that the regulation entropy is an effective order parameter in evaluating the robustness of biological control networks. Our work suggests a novel connection between the topological feature and the dynamic property of biological regulatory networks. Public Library of Science 2009-07-24 /pmc/articles/PMC2704863/ /pubmed/19629157 http://dx.doi.org/10.1371/journal.pcbi.1000442 Text en Wu et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Wu, Yangle
Zhang, Xiaomeng
Yu, Jianglei
Ouyang, Qi
Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks
title Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks
title_full Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks
title_fullStr Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks
title_full_unstemmed Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks
title_short Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks
title_sort identification of a topological characteristic responsible for the biological robustness of regulatory networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704863/
https://www.ncbi.nlm.nih.gov/pubmed/19629157
http://dx.doi.org/10.1371/journal.pcbi.1000442
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