rtracklayer: an R package for interfacing with genome browsers

Summary: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a...

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Detalles Bibliográficos
Autores principales: Lawrence, Michael, Gentleman, Robert, Carey, Vincent
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705236/
https://www.ncbi.nlm.nih.gov/pubmed/19468054
http://dx.doi.org/10.1093/bioinformatics/btp328
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author Lawrence, Michael
Gentleman, Robert
Carey, Vincent
author_facet Lawrence, Michael
Gentleman, Robert
Carey, Vincent
author_sort Lawrence, Michael
collection PubMed
description Summary: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported. Availability: The package is freely available from http://www.bioconductor.org/. A quick-start vignette is included with the package. Contact: mflawren@fhcrc.org
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spelling pubmed-27052362009-07-06 rtracklayer: an R package for interfacing with genome browsers Lawrence, Michael Gentleman, Robert Carey, Vincent Bioinformatics Applications Note Summary: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported. Availability: The package is freely available from http://www.bioconductor.org/. A quick-start vignette is included with the package. Contact: mflawren@fhcrc.org Oxford University Press 2009-07-15 2009-05-25 /pmc/articles/PMC2705236/ /pubmed/19468054 http://dx.doi.org/10.1093/bioinformatics/btp328 Text en http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Lawrence, Michael
Gentleman, Robert
Carey, Vincent
rtracklayer: an R package for interfacing with genome browsers
title rtracklayer: an R package for interfacing with genome browsers
title_full rtracklayer: an R package for interfacing with genome browsers
title_fullStr rtracklayer: an R package for interfacing with genome browsers
title_full_unstemmed rtracklayer: an R package for interfacing with genome browsers
title_short rtracklayer: an R package for interfacing with genome browsers
title_sort rtracklayer: an r package for interfacing with genome browsers
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705236/
https://www.ncbi.nlm.nih.gov/pubmed/19468054
http://dx.doi.org/10.1093/bioinformatics/btp328
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