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An indirect approach to the extensive calculation of relationship coefficients
A method was described for calculating population statistics on relationship coefficients without using corresponding individual data. It relied on the structure of the inverse of the numerator relationship matrix between individuals under investigation and ancestors. Computation times were observed...
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Formato: | Texto |
Lenguaje: | English |
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BioMed Central
2002
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705453/ https://www.ncbi.nlm.nih.gov/pubmed/12270102 http://dx.doi.org/10.1186/1297-9686-34-4-409 |
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author | Colleau, Jean-Jacques |
author_facet | Colleau, Jean-Jacques |
author_sort | Colleau, Jean-Jacques |
collection | PubMed |
description | A method was described for calculating population statistics on relationship coefficients without using corresponding individual data. It relied on the structure of the inverse of the numerator relationship matrix between individuals under investigation and ancestors. Computation times were observed on simulated populations and were compared to those incurred with a conventional direct approach. The indirect approach turned out to be very efficient for multiplying the relationship matrix corresponding to planned matings (full design) by any vector. Efficiency was generally still good or very good for calculating statistics on these simulated populations. An extreme implementation of the method is the calculation of inbreeding coefficients themselves. Relative performances of the indirect method were good except when many full-sibs during many generations existed in the population. |
format | Text |
id | pubmed-2705453 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2002 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-27054532009-07-03 An indirect approach to the extensive calculation of relationship coefficients Colleau, Jean-Jacques Genet Sel Evol Research A method was described for calculating population statistics on relationship coefficients without using corresponding individual data. It relied on the structure of the inverse of the numerator relationship matrix between individuals under investigation and ancestors. Computation times were observed on simulated populations and were compared to those incurred with a conventional direct approach. The indirect approach turned out to be very efficient for multiplying the relationship matrix corresponding to planned matings (full design) by any vector. Efficiency was generally still good or very good for calculating statistics on these simulated populations. An extreme implementation of the method is the calculation of inbreeding coefficients themselves. Relative performances of the indirect method were good except when many full-sibs during many generations existed in the population. BioMed Central 2002-07-15 /pmc/articles/PMC2705453/ /pubmed/12270102 http://dx.doi.org/10.1186/1297-9686-34-4-409 Text en Copyright © 2002 INRA, EDP Sciences |
spellingShingle | Research Colleau, Jean-Jacques An indirect approach to the extensive calculation of relationship coefficients |
title | An indirect approach to the extensive calculation of relationship coefficients |
title_full | An indirect approach to the extensive calculation of relationship coefficients |
title_fullStr | An indirect approach to the extensive calculation of relationship coefficients |
title_full_unstemmed | An indirect approach to the extensive calculation of relationship coefficients |
title_short | An indirect approach to the extensive calculation of relationship coefficients |
title_sort | indirect approach to the extensive calculation of relationship coefficients |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705453/ https://www.ncbi.nlm.nih.gov/pubmed/12270102 http://dx.doi.org/10.1186/1297-9686-34-4-409 |
work_keys_str_mv | AT colleaujeanjacques anindirectapproachtotheextensivecalculationofrelationshipcoefficients AT colleaujeanjacques indirectapproachtotheextensivecalculationofrelationshipcoefficients |