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An indirect approach to the extensive calculation of relationship coefficients

A method was described for calculating population statistics on relationship coefficients without using corresponding individual data. It relied on the structure of the inverse of the numerator relationship matrix between individuals under investigation and ancestors. Computation times were observed...

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Detalles Bibliográficos
Autor principal: Colleau, Jean-Jacques
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2002
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705453/
https://www.ncbi.nlm.nih.gov/pubmed/12270102
http://dx.doi.org/10.1186/1297-9686-34-4-409
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author Colleau, Jean-Jacques
author_facet Colleau, Jean-Jacques
author_sort Colleau, Jean-Jacques
collection PubMed
description A method was described for calculating population statistics on relationship coefficients without using corresponding individual data. It relied on the structure of the inverse of the numerator relationship matrix between individuals under investigation and ancestors. Computation times were observed on simulated populations and were compared to those incurred with a conventional direct approach. The indirect approach turned out to be very efficient for multiplying the relationship matrix corresponding to planned matings (full design) by any vector. Efficiency was generally still good or very good for calculating statistics on these simulated populations. An extreme implementation of the method is the calculation of inbreeding coefficients themselves. Relative performances of the indirect method were good except when many full-sibs during many generations existed in the population.
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spelling pubmed-27054532009-07-03 An indirect approach to the extensive calculation of relationship coefficients Colleau, Jean-Jacques Genet Sel Evol Research A method was described for calculating population statistics on relationship coefficients without using corresponding individual data. It relied on the structure of the inverse of the numerator relationship matrix between individuals under investigation and ancestors. Computation times were observed on simulated populations and were compared to those incurred with a conventional direct approach. The indirect approach turned out to be very efficient for multiplying the relationship matrix corresponding to planned matings (full design) by any vector. Efficiency was generally still good or very good for calculating statistics on these simulated populations. An extreme implementation of the method is the calculation of inbreeding coefficients themselves. Relative performances of the indirect method were good except when many full-sibs during many generations existed in the population. BioMed Central 2002-07-15 /pmc/articles/PMC2705453/ /pubmed/12270102 http://dx.doi.org/10.1186/1297-9686-34-4-409 Text en Copyright © 2002 INRA, EDP Sciences
spellingShingle Research
Colleau, Jean-Jacques
An indirect approach to the extensive calculation of relationship coefficients
title An indirect approach to the extensive calculation of relationship coefficients
title_full An indirect approach to the extensive calculation of relationship coefficients
title_fullStr An indirect approach to the extensive calculation of relationship coefficients
title_full_unstemmed An indirect approach to the extensive calculation of relationship coefficients
title_short An indirect approach to the extensive calculation of relationship coefficients
title_sort indirect approach to the extensive calculation of relationship coefficients
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705453/
https://www.ncbi.nlm.nih.gov/pubmed/12270102
http://dx.doi.org/10.1186/1297-9686-34-4-409
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