Cargando…

Methylation detection oligonucleotide microarray analysis: a high-resolution method for detection of CpG island methylation

Methylation of CpG islands associated with genes can affect the expression of the proximal gene, and methylation of non-associated CpG islands correlates to genomic instability. This epigenetic modification has been shown to be important in many pathologies, from development and disease to cancer. W...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kamalakaran, Sitharthan, Kendall, Jude, Zhao, Xiaoyue, Tang, Chunlao, Khan, Sohail, Ravi, Kandasamy, Auletta, Theresa, Riggs, Michael, Wang, Yun, Helland, Åslaug, Naume, Bjørn, Dimitrova, Nevenka, Børresen-Dale, Anne-Lise, Hicks, Jim, Lucito, Robert
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2009
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2709589/ https://www.ncbi.nlm.nih.gov/pubmed/19474344 http://dx.doi.org/10.1093/nar/gkp413

Ejemplares similares

Major Chromosomal Breakpoint Intervals in Breast Cancer Co-Localize with Differentially Methylated Regions
por: Eric Tang, Man-Hung, et al.
Publicado: (2012)

Effective normalization for copy number variation detection from whole genome sequencing
por: Janevski, Angel, et al.
Publicado: (2012)

Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer
por: Wrzeszczynski, Kazimierz O., et al.
Publicado: (2011)

PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment
por: Janevski, Angel, et al.
Publicado: (2009)

Rapid and sensitive detection of CpG-methylation using methyl-binding (MB)-PCR
por: Gebhard, Claudia, et al.
Publicado: (2006)

Enhanced gene repair mediated by methyl-CpG-modified single-stranded oligonucleotides
por: Bertoni, Carmen, et al.
Publicado: (2009)

Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis
por: Fleischer, Thomas, et al.
Publicado: (2014)

Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing
por: Yuen, Zaka Wing-Sze, et al.
Publicado: (2021)

Detection of viral DNA sequences in sporadic colorectal cancers in relation to CpG island methylation and methylator phenotype
por: Karpinski, Pawel, et al.
Publicado: (2011)

PathTracer: High-sensitivity detection of differential pathway activity in tumours
por: Nygård, Ståle, et al.
Publicado: (2019)

The Effects of O(6)-methyl Guanine DNA-methyl Transferase Promotor Methylation and CpG1, CpG2, CpG3 and CpG4 Methylation on Treatment Response and their Prognostic Significance in Patients with Glioblastoma
por: Yildiz, OG, et al.
Publicado: (2020)

Conformation Effects of CpG Methylation on Single-Stranded DNA Oligonucleotides: Analysis of the Opioid Peptide Dynorphin-Coding Sequences
por: Taqi, Malik Mumtaz, et al.
Publicado: (2012)

Methylation-Specific MLPA (MS-MLPA): simultaneous detection of CpG methylation and copy number changes of up to 40 sequences
por: Nygren, Anders O. H., et al.
Publicado: (2005)

Evaluation of MetriGenix custom 4D™ arrays applied for detection of breast cancer subtypes
por: Muggerud, Aslaug Aamodt, et al.
Publicado: (2006)

DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts
por: Catoni, Marco, et al.
Publicado: (2018)

Preservation of methylated CpG dinucleotides in human CpG islands
por: Panchin, Alexander Y., et al.
Publicado: (2016)

High Resolution Detection and Analysis of CpG Dinucleotides Methylation Using MBD-Seq Technology
por: Lan, Xun, et al.
Publicado: (2011)

Detection and analysis of CpG sites with multimodal DNA methylation level distributions and their relationships with SNPs
por: Hu, Ke, et al.
Publicado: (2018)

Detecting multiple differentially methylated CpG sites and regions related to dimensional psychopathology in youths
por: Spindola, Leticia M., et al.
Publicado: (2019)

Detection of CRISPR-mediated genome modifications through altered methylation patterns of CpG islands
por: Farris, M. Heath, et al.
Publicado: (2020)

Detection of CpG Methylation in G-Quadruplex Forming Sequences Using G-Quadruplex Ligands
por: Hasegawa, Hijiri, et al.
Publicado: (2021)

DNA methylation signature (SAM40) identifies subgroups of the Luminal A breast cancer samples with distinct survival
por: Fleischer, Thomas, et al.
Publicado: (2016)

Engineering CpG island DNA methylation in pluripotent cells through synthetic CpG-free ssDNA insertion
por: Tompkins, Joshua, et al.
Publicado: (2023)

CpG Oligonucleotides as Cancer Vaccine Adjuvants
por: Shirota, Hidekazu, et al.
Publicado: (2015)

Factors to preserve CpG-rich sequences in methylated CpG islands
por: Miyahara, Hiroki, et al.
Publicado: (2015)

Detection of Rare Methyl-CpG Binding Protein 2 Gene Missense Mutations in Patients With Schizophrenia
por: Chen, Chia-Hsiang, et al.
Publicado: (2020)

Recognition of methylated DNA through methyl-CpG binding domain proteins
por: Zou, Xueqing, et al.
Publicado: (2012)

DNA methylation and methyl-CpG binding proteins: developmental requirements and function
por: Bogdanović, Ozren, et al.
Publicado: (2009)

Densely methylated DNA traps Methyl-CpG–binding domain protein 2 but permits free diffusion by Methyl-CpG–binding domain protein 3
por: Leighton, Gage O., et al.
Publicado: (2022)

In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases
por: Arand, Julia, et al.
Publicado: (2012)

CpG and Non-CpG Methylation in Epigenetic Gene Regulation and Brain Function
por: Jang, Hyun Sik, et al.
Publicado: (2017)

Deoxyribonucleic acid methylation profiling of single human blastocysts by methylated CpG-island amplification coupled with CpG-island microarray
por: Huntriss, John, et al.
Publicado: (2015)

The revival of CpG oligonucleotide-based cancer immunotherapies
por: Adamus, Tomasz, et al.
Publicado: (2018)

Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands
por: Dai, Wei, et al.
Publicado: (2008)

DNA Methylation and Chromatin: Role(s) of Methyl-CpG-Binding Protein ZBTB38
por: de Dieuleveult, Maud, et al.
Publicado: (2018)

Genomics of CpG Methylation in Developing and Developed Zebrafish
por: McGaughey, David M., et al.
Publicado: (2014)

CpG Distribution and Methylation Pattern in Porcine Parvovirus
por: Tóth, Renáta, et al.
Publicado: (2013)

CpG methylation patterns of human mitochondrial DNA
por: Liu, Baojing, et al.
Publicado: (2016)

Different Methylation of CpG-SNPs in Behcet's Disease
por: Huang, Yang, et al.
Publicado: (2019)

DNA CpG methylation in sequential glioblastoma specimens
por: Kraboth, Zoltan, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_22erl6blv42mdsu7n3uqir7r0b