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Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway
Cellular signalling networks integrate environmental stimuli with the information on cellular status. These networks must be robust against stochastic fluctuations in stimuli as well as in the amounts of signalling components. Here, we challenge the yeast HOG signal-transduction pathway with systema...
Autores principales: | , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2710867/ https://www.ncbi.nlm.nih.gov/pubmed/19536204 http://dx.doi.org/10.1038/msb.2009.36 |
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author | Krantz, Marcus Ahmadpour, Doryaneh Ottosson, Lars-Göran Warringer, Jonas Waltermann, Christian Nordlander, Bodil Klipp, Edda Blomberg, Anders Hohmann, Stefan Kitano, Hiroaki |
author_facet | Krantz, Marcus Ahmadpour, Doryaneh Ottosson, Lars-Göran Warringer, Jonas Waltermann, Christian Nordlander, Bodil Klipp, Edda Blomberg, Anders Hohmann, Stefan Kitano, Hiroaki |
author_sort | Krantz, Marcus |
collection | PubMed |
description | Cellular signalling networks integrate environmental stimuli with the information on cellular status. These networks must be robust against stochastic fluctuations in stimuli as well as in the amounts of signalling components. Here, we challenge the yeast HOG signal-transduction pathway with systematic perturbations in components' expression levels under various external conditions in search for nodes of fragility. We observe a substantially higher frequency of fragile nodes in this signal-transduction pathway than that has been observed for other cellular processes. These fragilities disperse without any clear pattern over biochemical functions or location in pathway topology and they are largely independent of pathway activation by external stimuli. However, the strongest toxicities are caused by pathway hyperactivation. In silico analysis highlights the impact of model structure on in silico robustness, and suggests complex formation and scaffolding as important contributors to the observed fragility patterns. Thus, in vivo robustness data can be used to discriminate and improve mathematical models. |
format | Text |
id | pubmed-2710867 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-27108672009-07-15 Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway Krantz, Marcus Ahmadpour, Doryaneh Ottosson, Lars-Göran Warringer, Jonas Waltermann, Christian Nordlander, Bodil Klipp, Edda Blomberg, Anders Hohmann, Stefan Kitano, Hiroaki Mol Syst Biol Report Cellular signalling networks integrate environmental stimuli with the information on cellular status. These networks must be robust against stochastic fluctuations in stimuli as well as in the amounts of signalling components. Here, we challenge the yeast HOG signal-transduction pathway with systematic perturbations in components' expression levels under various external conditions in search for nodes of fragility. We observe a substantially higher frequency of fragile nodes in this signal-transduction pathway than that has been observed for other cellular processes. These fragilities disperse without any clear pattern over biochemical functions or location in pathway topology and they are largely independent of pathway activation by external stimuli. However, the strongest toxicities are caused by pathway hyperactivation. In silico analysis highlights the impact of model structure on in silico robustness, and suggests complex formation and scaffolding as important contributors to the observed fragility patterns. Thus, in vivo robustness data can be used to discriminate and improve mathematical models. Nature Publishing Group 2009-06-16 /pmc/articles/PMC2710867/ /pubmed/19536204 http://dx.doi.org/10.1038/msb.2009.36 Text en Copyright © 2009, EMBO and Nature Publishing Group http://creativecommons.org/licenses/by-nc-sa/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits distribution and reproduction in any medium, provided the original author and source are credited. Creation of derivative works is permitted but the resulting work may be distributed only under the same or similar licence to this one. This licence does not permit commercial exploitation without specific permission. |
spellingShingle | Report Krantz, Marcus Ahmadpour, Doryaneh Ottosson, Lars-Göran Warringer, Jonas Waltermann, Christian Nordlander, Bodil Klipp, Edda Blomberg, Anders Hohmann, Stefan Kitano, Hiroaki Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway |
title | Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway |
title_full | Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway |
title_fullStr | Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway |
title_full_unstemmed | Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway |
title_short | Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway |
title_sort | robustness and fragility in the yeast high osmolarity glycerol (hog) signal-transduction pathway |
topic | Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2710867/ https://www.ncbi.nlm.nih.gov/pubmed/19536204 http://dx.doi.org/10.1038/msb.2009.36 |
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