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Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway

Cellular signalling networks integrate environmental stimuli with the information on cellular status. These networks must be robust against stochastic fluctuations in stimuli as well as in the amounts of signalling components. Here, we challenge the yeast HOG signal-transduction pathway with systema...

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Autores principales: Krantz, Marcus, Ahmadpour, Doryaneh, Ottosson, Lars-Göran, Warringer, Jonas, Waltermann, Christian, Nordlander, Bodil, Klipp, Edda, Blomberg, Anders, Hohmann, Stefan, Kitano, Hiroaki
Formato: Texto
Lenguaje:English
Publicado: Nature Publishing Group 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2710867/
https://www.ncbi.nlm.nih.gov/pubmed/19536204
http://dx.doi.org/10.1038/msb.2009.36
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author Krantz, Marcus
Ahmadpour, Doryaneh
Ottosson, Lars-Göran
Warringer, Jonas
Waltermann, Christian
Nordlander, Bodil
Klipp, Edda
Blomberg, Anders
Hohmann, Stefan
Kitano, Hiroaki
author_facet Krantz, Marcus
Ahmadpour, Doryaneh
Ottosson, Lars-Göran
Warringer, Jonas
Waltermann, Christian
Nordlander, Bodil
Klipp, Edda
Blomberg, Anders
Hohmann, Stefan
Kitano, Hiroaki
author_sort Krantz, Marcus
collection PubMed
description Cellular signalling networks integrate environmental stimuli with the information on cellular status. These networks must be robust against stochastic fluctuations in stimuli as well as in the amounts of signalling components. Here, we challenge the yeast HOG signal-transduction pathway with systematic perturbations in components' expression levels under various external conditions in search for nodes of fragility. We observe a substantially higher frequency of fragile nodes in this signal-transduction pathway than that has been observed for other cellular processes. These fragilities disperse without any clear pattern over biochemical functions or location in pathway topology and they are largely independent of pathway activation by external stimuli. However, the strongest toxicities are caused by pathway hyperactivation. In silico analysis highlights the impact of model structure on in silico robustness, and suggests complex formation and scaffolding as important contributors to the observed fragility patterns. Thus, in vivo robustness data can be used to discriminate and improve mathematical models.
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spelling pubmed-27108672009-07-15 Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway Krantz, Marcus Ahmadpour, Doryaneh Ottosson, Lars-Göran Warringer, Jonas Waltermann, Christian Nordlander, Bodil Klipp, Edda Blomberg, Anders Hohmann, Stefan Kitano, Hiroaki Mol Syst Biol Report Cellular signalling networks integrate environmental stimuli with the information on cellular status. These networks must be robust against stochastic fluctuations in stimuli as well as in the amounts of signalling components. Here, we challenge the yeast HOG signal-transduction pathway with systematic perturbations in components' expression levels under various external conditions in search for nodes of fragility. We observe a substantially higher frequency of fragile nodes in this signal-transduction pathway than that has been observed for other cellular processes. These fragilities disperse without any clear pattern over biochemical functions or location in pathway topology and they are largely independent of pathway activation by external stimuli. However, the strongest toxicities are caused by pathway hyperactivation. In silico analysis highlights the impact of model structure on in silico robustness, and suggests complex formation and scaffolding as important contributors to the observed fragility patterns. Thus, in vivo robustness data can be used to discriminate and improve mathematical models. Nature Publishing Group 2009-06-16 /pmc/articles/PMC2710867/ /pubmed/19536204 http://dx.doi.org/10.1038/msb.2009.36 Text en Copyright © 2009, EMBO and Nature Publishing Group http://creativecommons.org/licenses/by-nc-sa/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits distribution and reproduction in any medium, provided the original author and source are credited. Creation of derivative works is permitted but the resulting work may be distributed only under the same or similar licence to this one. This licence does not permit commercial exploitation without specific permission.
spellingShingle Report
Krantz, Marcus
Ahmadpour, Doryaneh
Ottosson, Lars-Göran
Warringer, Jonas
Waltermann, Christian
Nordlander, Bodil
Klipp, Edda
Blomberg, Anders
Hohmann, Stefan
Kitano, Hiroaki
Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway
title Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway
title_full Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway
title_fullStr Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway
title_full_unstemmed Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway
title_short Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway
title_sort robustness and fragility in the yeast high osmolarity glycerol (hog) signal-transduction pathway
topic Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2710867/
https://www.ncbi.nlm.nih.gov/pubmed/19536204
http://dx.doi.org/10.1038/msb.2009.36
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