Cargando…

Platform dependence of inference on gene-wise and gene-set involvement in human lung development

BACKGROUND: With the recent development of microarray technologies, the comparability of gene expression data obtained from different platforms poses an important problem. We evaluated two widely used platforms, Affymetrix U133 Plus 2.0 and the Illumina HumanRef-8 v2 Expression Bead Chips, for compa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Du, Rose, Tantisira, Kelan, Carey, Vincent, Bhattacharya, Soumyaroop, Metje, Stephanie, Kho, Alvin T, Klanderman, Barbara J, Gaedigk, Roger, Lazarus, Ross, Mariani, Thomas J, Leeder, J Steven, Weiss, Scott T
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2711081/ https://www.ncbi.nlm.nih.gov/pubmed/19545372 http://dx.doi.org/10.1186/1471-2105-10-189

Ejemplares similares

Vitamin D related genes in lung development and asthma pathogenesis
por: Kho, Alvin T, et al.
Publicado: (2013)

Expression analysis of asthma candidate genes during human and murine lung development
por: Melén, Erik, et al.
Publicado: (2011)

Effect of Intrauterine Smoke Exposure on microRNA-15a Expression in Human Lung Development and Subsequent Asthma Risk
por: Sharma, Sunita, et al.
Publicado: (2020)

COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
por: Li, Jiang, et al.
Publicado: (2020)

Circulating microRNAs and prediction of asthma exacerbation in childhood asthma
por: Kho, Alvin T., et al.
Publicado: (2018)

Systems Genomics Reveals microRNA Regulation of ICS Response in Childhood Asthma
por: Sharma, Rinku, et al.
Publicado: (2023)

COPD-associated miR-145-5p is downregulated in early-decline FEV(1) trajectories in childhood asthma
por: Tiwari, Anshul, et al.
Publicado: (2020)

Intrauterine Smoke Exposure, microRNA Expression during Human Lung Development, and Childhood Asthma
por: Rosenberg, Lynne, et al.
Publicado: (2023)

Circulating microRNAs and association with methacholine PC(20) in the Childhood Asthma Management Program (CAMP) cohort
por: Davis, Joshua S., et al.
Publicado: (2017)

Seasonal Variation in miR-328-3p and let-7d-3p Are Associated With Seasonal Allergies and Asthma Symptoms in Children
por: Tiwari, Anshul, et al.
Publicado: (2021)

Childhood infections and asthma: at the crossroads of the hygiene and Barker hypotheses
por: Tantisira, Kelan G, et al.
Publicado: (2001)

Circulating MicroRNA: Incident Asthma Prediction and Vitamin D Effect Modification
por: Li, Jiang, et al.
Publicado: (2021)

Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling
por: Bhattacharya, Soumyaroop, et al.
Publicado: (2005)

Systems biology approaches to identify developmental bases for lung diseases
por: Bhattacharya, Soumyaroop, et al.
Publicado: (2013)

Polymorphisms in signal transducer and activator of transcription 3 and lung function in asthma
por: Litonjua, Augusto A, et al.
Publicado: (2005)

Whole genome sequencing identifies high-impact variants in well-known pharmacogenomic genes
por: Choi, Jihoon, et al.
Publicado: (2018)

A polymorphism in the thyroid hormone receptor gene is associated with bronchodilator response in asthmatics
por: Duan, Qing Ling, et al.
Publicado: (2012)

Mechanical forces induce an asthma gene signature in healthy airway epithelial cells
por: Kılıç, Ayşe, et al.
Publicado: (2020)

DNA methylation perturbations may link altered development and aging in the lung
por: Kachroo, Priyadarshini, et al.
Publicado: (2021)

CASTER: Cross-Sectional Asthma STEroid Response Measurement
por: Kho, Alvin T., et al.
Publicado: (2020)

Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD
por: Tiwari, Anshul, et al.
Publicado: (2022)

Circulating MicroRNAs: Association with Lung Function in Asthma
por: Kho, Alvin T., et al.
Publicado: (2016)

Drug Repurposing to Treat Glucocorticoid Resistance in Asthma
por: Wang, Alberta L., et al.
Publicado: (2021)

Global tests of P-values for multifactor dimensionality reduction models in selection of optimal number of target genes
por: Dai, Hongying, et al.
Publicado: (2012)

RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells
por: Himes, Blanca E., et al.
Publicado: (2014)

Handover of the Editor in Chief positions – from the new Editors-in-Chief to the readership of Respiratory Research
por: Tantisira, Kelan, et al.
Publicado: (2019)

A high-throughput chemical screen identifies novel inhibitors and enhancers of anti-inflammatory functions of the glucocorticoid receptor
por: Jiang, Xiaofeng, et al.
Publicado: (2017)

Peripheral blood gene expression profiles in COPD subjects
por: Bhattacharya, Soumyaroop, et al.
Publicado: (2011)

Vitamin D Modulates Expression of the Airway Smooth Muscle Transcriptome in Fatal Asthma
por: Himes, Blanca E., et al.
Publicado: (2015)

Genetic Signatures of Asthma Exacerbation
por: Park, Heung-Woo, et al.
Publicado: (2017)

Alternative Splicing of the SLCO1B1 Gene: An Exploratory Analysis of Isoform Diversity in Pediatric Liver
por: van Groen, Bianca D., et al.
Publicado: (2020)

Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes
por: Chu, Jen-hwa, et al.
Publicado: (2011)

Lung function, airway and peripheral basophils and eosinophils are associated with molecular pharmacogenomic endotypes of steroid response in severe asthma
por: Kho, Alvin T, et al.
Publicado: (2022)

A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism
por: Chu, Jen-hwa, et al.
Publicado: (2009)

Gene Expression Risk Scores for COVID-19 Illness Severity
por: Peterson, Derick R, et al.
Publicado: (2021)

Gene Expression Risk Scores for COVID-19 Illness Severity
por: Peterson, Derick R, et al.
Publicado: (2021)

Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth
por: Hamvas, Aaron, et al.
Publicado: (2018)

Learning pair-wise gene functional similarity by multiplex gene expression maps
por: An, Li, et al.
Publicado: (2012)

PseudoChecker: an integrated online platform for gene inactivation inference
por: Alves, Luís Q, et al.
Publicado: (2020)

Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data
por: Li, Yunfeng, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_4kdp8aqhjinauu2n5g198araqm