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U-Compare: share and compare text mining tools with UIMA
Summary: Due to the increasing number of text mining resources (tools and corpora) available to biologists, interoperability issues between these resources are becoming significant obstacles to using them effectively. UIMA, the Unstructured Information Management Architecture, is an open framework d...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712335/ https://www.ncbi.nlm.nih.gov/pubmed/19414535 http://dx.doi.org/10.1093/bioinformatics/btp289 |
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author | Kano, Yoshinobu Baumgartner, William A. McCrohon, Luke Ananiadou, Sophia Cohen, K. Bretonnel Hunter, Lawrence Tsujii, Jun'ichi |
author_facet | Kano, Yoshinobu Baumgartner, William A. McCrohon, Luke Ananiadou, Sophia Cohen, K. Bretonnel Hunter, Lawrence Tsujii, Jun'ichi |
author_sort | Kano, Yoshinobu |
collection | PubMed |
description | Summary: Due to the increasing number of text mining resources (tools and corpora) available to biologists, interoperability issues between these resources are becoming significant obstacles to using them effectively. UIMA, the Unstructured Information Management Architecture, is an open framework designed to aid in the construction of more interoperable tools. U-Compare is built on top of the UIMA framework, and provides both a concrete framework for out-of-the-box text mining and a sophisticated evaluation platform allowing users to run specific tools on any target text, generating both detailed statistics and instance-based visualizations of outputs. U-Compare is a joint project, providing the world's largest, and still growing, collection of UIMA-compatible resources. These resources, originally developed by different groups for a variety of domains, include many famous tools and corpora. U-Compare can be launched straight from the web, without needing to be manually installed. All U-Compare components are provided ready-to-use and can be combined easily via a drag-and-drop interface without any programming. External UIMA components can also simply be mixed with U-Compare components, without distinguishing between locally and remotely deployed resources. Availability: http://u-compare.org/ Contact: kano@is.s.u-tokyo.ac.jp |
format | Text |
id | pubmed-2712335 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-27123352009-07-21 U-Compare: share and compare text mining tools with UIMA Kano, Yoshinobu Baumgartner, William A. McCrohon, Luke Ananiadou, Sophia Cohen, K. Bretonnel Hunter, Lawrence Tsujii, Jun'ichi Bioinformatics Applications Note Summary: Due to the increasing number of text mining resources (tools and corpora) available to biologists, interoperability issues between these resources are becoming significant obstacles to using them effectively. UIMA, the Unstructured Information Management Architecture, is an open framework designed to aid in the construction of more interoperable tools. U-Compare is built on top of the UIMA framework, and provides both a concrete framework for out-of-the-box text mining and a sophisticated evaluation platform allowing users to run specific tools on any target text, generating both detailed statistics and instance-based visualizations of outputs. U-Compare is a joint project, providing the world's largest, and still growing, collection of UIMA-compatible resources. These resources, originally developed by different groups for a variety of domains, include many famous tools and corpora. U-Compare can be launched straight from the web, without needing to be manually installed. All U-Compare components are provided ready-to-use and can be combined easily via a drag-and-drop interface without any programming. External UIMA components can also simply be mixed with U-Compare components, without distinguishing between locally and remotely deployed resources. Availability: http://u-compare.org/ Contact: kano@is.s.u-tokyo.ac.jp Oxford University Press 2009-08-01 2009-05-04 /pmc/articles/PMC2712335/ /pubmed/19414535 http://dx.doi.org/10.1093/bioinformatics/btp289 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Note Kano, Yoshinobu Baumgartner, William A. McCrohon, Luke Ananiadou, Sophia Cohen, K. Bretonnel Hunter, Lawrence Tsujii, Jun'ichi U-Compare: share and compare text mining tools with UIMA |
title | U-Compare: share and compare text mining tools with UIMA |
title_full | U-Compare: share and compare text mining tools with UIMA |
title_fullStr | U-Compare: share and compare text mining tools with UIMA |
title_full_unstemmed | U-Compare: share and compare text mining tools with UIMA |
title_short | U-Compare: share and compare text mining tools with UIMA |
title_sort | u-compare: share and compare text mining tools with uima |
topic | Applications Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712335/ https://www.ncbi.nlm.nih.gov/pubmed/19414535 http://dx.doi.org/10.1093/bioinformatics/btp289 |
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