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U-Compare: share and compare text mining tools with UIMA

Summary: Due to the increasing number of text mining resources (tools and corpora) available to biologists, interoperability issues between these resources are becoming significant obstacles to using them effectively. UIMA, the Unstructured Information Management Architecture, is an open framework d...

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Detalles Bibliográficos
Autores principales: Kano, Yoshinobu, Baumgartner, William A., McCrohon, Luke, Ananiadou, Sophia, Cohen, K. Bretonnel, Hunter, Lawrence, Tsujii, Jun'ichi
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712335/
https://www.ncbi.nlm.nih.gov/pubmed/19414535
http://dx.doi.org/10.1093/bioinformatics/btp289
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author Kano, Yoshinobu
Baumgartner, William A.
McCrohon, Luke
Ananiadou, Sophia
Cohen, K. Bretonnel
Hunter, Lawrence
Tsujii, Jun'ichi
author_facet Kano, Yoshinobu
Baumgartner, William A.
McCrohon, Luke
Ananiadou, Sophia
Cohen, K. Bretonnel
Hunter, Lawrence
Tsujii, Jun'ichi
author_sort Kano, Yoshinobu
collection PubMed
description Summary: Due to the increasing number of text mining resources (tools and corpora) available to biologists, interoperability issues between these resources are becoming significant obstacles to using them effectively. UIMA, the Unstructured Information Management Architecture, is an open framework designed to aid in the construction of more interoperable tools. U-Compare is built on top of the UIMA framework, and provides both a concrete framework for out-of-the-box text mining and a sophisticated evaluation platform allowing users to run specific tools on any target text, generating both detailed statistics and instance-based visualizations of outputs. U-Compare is a joint project, providing the world's largest, and still growing, collection of UIMA-compatible resources. These resources, originally developed by different groups for a variety of domains, include many famous tools and corpora. U-Compare can be launched straight from the web, without needing to be manually installed. All U-Compare components are provided ready-to-use and can be combined easily via a drag-and-drop interface without any programming. External UIMA components can also simply be mixed with U-Compare components, without distinguishing between locally and remotely deployed resources. Availability: http://u-compare.org/ Contact: kano@is.s.u-tokyo.ac.jp
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spelling pubmed-27123352009-07-21 U-Compare: share and compare text mining tools with UIMA Kano, Yoshinobu Baumgartner, William A. McCrohon, Luke Ananiadou, Sophia Cohen, K. Bretonnel Hunter, Lawrence Tsujii, Jun'ichi Bioinformatics Applications Note Summary: Due to the increasing number of text mining resources (tools and corpora) available to biologists, interoperability issues between these resources are becoming significant obstacles to using them effectively. UIMA, the Unstructured Information Management Architecture, is an open framework designed to aid in the construction of more interoperable tools. U-Compare is built on top of the UIMA framework, and provides both a concrete framework for out-of-the-box text mining and a sophisticated evaluation platform allowing users to run specific tools on any target text, generating both detailed statistics and instance-based visualizations of outputs. U-Compare is a joint project, providing the world's largest, and still growing, collection of UIMA-compatible resources. These resources, originally developed by different groups for a variety of domains, include many famous tools and corpora. U-Compare can be launched straight from the web, without needing to be manually installed. All U-Compare components are provided ready-to-use and can be combined easily via a drag-and-drop interface without any programming. External UIMA components can also simply be mixed with U-Compare components, without distinguishing between locally and remotely deployed resources. Availability: http://u-compare.org/ Contact: kano@is.s.u-tokyo.ac.jp Oxford University Press 2009-08-01 2009-05-04 /pmc/articles/PMC2712335/ /pubmed/19414535 http://dx.doi.org/10.1093/bioinformatics/btp289 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Kano, Yoshinobu
Baumgartner, William A.
McCrohon, Luke
Ananiadou, Sophia
Cohen, K. Bretonnel
Hunter, Lawrence
Tsujii, Jun'ichi
U-Compare: share and compare text mining tools with UIMA
title U-Compare: share and compare text mining tools with UIMA
title_full U-Compare: share and compare text mining tools with UIMA
title_fullStr U-Compare: share and compare text mining tools with UIMA
title_full_unstemmed U-Compare: share and compare text mining tools with UIMA
title_short U-Compare: share and compare text mining tools with UIMA
title_sort u-compare: share and compare text mining tools with uima
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712335/
https://www.ncbi.nlm.nih.gov/pubmed/19414535
http://dx.doi.org/10.1093/bioinformatics/btp289
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