Cargando…
OligoRAP – an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity
BACKGROUND: High throughput gene expression studies using oligonucleotide microarrays depend on the specificity of each oligonucleotide (oligo or probe) for its target gene. However, target specific probes can only be designed when a reference genome of the species at hand were completely sequenced,...
Autores principales: | Neerincx, Pieter BT, Rauwerda, Han, Nie, Haisheng, Groenen, Martien AM, Breit, Timo M, Leunissen, Jack AM |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2009
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712747/ https://www.ncbi.nlm.nih.gov/pubmed/19615117 http://dx.doi.org/10.1186/1753-6561-3-S4-S4 |
Ejemplares similares
-
Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis
por: Neerincx, Pieter BT, et al.
Publicado: (2009) -
Microarray data mining using Bioconductor packages
por: Nie, Haisheng, et al.
Publicado: (2009) -
sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters
por: Casel, Pierrot, et al.
Publicado: (2009) -
Using R in Taverna: RShell v1.2
por: Wassink, Ingo, et al.
Publicado: (2009) -
Salvaging Affymetrix probes after probe-level re-annotation
por: de Leeuw, Wim C, et al.
Publicado: (2008)