Mining Biological Pathways Using WikiPathways Web Services

WikiPathways is a platform for creating, updating, and sharing biological pathways [1]. Pathways can be edited and downloaded using the wiki-style website. Here we present a SOAP web service that provides programmatic access to WikiPathways that is complementary to the website. We describe the funct...

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Detalles Bibliográficos
Autores principales: Kelder, Thomas, Pico, Alexander R., Hanspers, Kristina, van Iersel, Martijn P., Evelo, Chris, Conklin, Bruce R.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2009
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714472/
https://www.ncbi.nlm.nih.gov/pubmed/19649250
http://dx.doi.org/10.1371/journal.pone.0006447
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author Kelder, Thomas
Pico, Alexander R.
Hanspers, Kristina
van Iersel, Martijn P.
Evelo, Chris
Conklin, Bruce R.
author_facet Kelder, Thomas
Pico, Alexander R.
Hanspers, Kristina
van Iersel, Martijn P.
Evelo, Chris
Conklin, Bruce R.
author_sort Kelder, Thomas
collection PubMed
description WikiPathways is a platform for creating, updating, and sharing biological pathways [1]. Pathways can be edited and downloaded using the wiki-style website. Here we present a SOAP web service that provides programmatic access to WikiPathways that is complementary to the website. We describe the functionality that this web service offers and discuss several use cases in detail. Exposing WikiPathways through a web service opens up new ways of utilizing pathway information and assisting the community curation process.
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spelling pubmed-27144722009-08-01 Mining Biological Pathways Using WikiPathways Web Services Kelder, Thomas Pico, Alexander R. Hanspers, Kristina van Iersel, Martijn P. Evelo, Chris Conklin, Bruce R. PLoS One Research Article WikiPathways is a platform for creating, updating, and sharing biological pathways [1]. Pathways can be edited and downloaded using the wiki-style website. Here we present a SOAP web service that provides programmatic access to WikiPathways that is complementary to the website. We describe the functionality that this web service offers and discuss several use cases in detail. Exposing WikiPathways through a web service opens up new ways of utilizing pathway information and assisting the community curation process. Public Library of Science 2009-07-30 /pmc/articles/PMC2714472/ /pubmed/19649250 http://dx.doi.org/10.1371/journal.pone.0006447 Text en Kelder et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Kelder, Thomas
Pico, Alexander R.
Hanspers, Kristina
van Iersel, Martijn P.
Evelo, Chris
Conklin, Bruce R.
Mining Biological Pathways Using WikiPathways Web Services
title Mining Biological Pathways Using WikiPathways Web Services
title_full Mining Biological Pathways Using WikiPathways Web Services
title_fullStr Mining Biological Pathways Using WikiPathways Web Services
title_full_unstemmed Mining Biological Pathways Using WikiPathways Web Services
title_short Mining Biological Pathways Using WikiPathways Web Services
title_sort mining biological pathways using wikipathways web services
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714472/
https://www.ncbi.nlm.nih.gov/pubmed/19649250
http://dx.doi.org/10.1371/journal.pone.0006447
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