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An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications

A framework that integrates an object model, research methods (workflows), the capture of experimental data sets and the provenance of those data sets for subject-centric research is presented. The design of the Framework object model draws on and extends pre-existing object models in the public dom...

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Autores principales: Lohrey, Jason M., Killeen, Neil E.B., Egan, Gary F.
Formato: Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2715266/
https://www.ncbi.nlm.nih.gov/pubmed/19636389
http://dx.doi.org/10.3389/neuro.11.019.2009
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author Lohrey, Jason M.
Killeen, Neil E.B.
Egan, Gary F.
author_facet Lohrey, Jason M.
Killeen, Neil E.B.
Egan, Gary F.
author_sort Lohrey, Jason M.
collection PubMed
description A framework that integrates an object model, research methods (workflows), the capture of experimental data sets and the provenance of those data sets for subject-centric research is presented. The design of the Framework object model draws on and extends pre-existing object models in the public domain. In particular the Framework tracks the state and life cycle of a subject during an experimental method, provides for reusable subjects, primary, derived and recursive data sets of arbitrary content types, and defines a user-friendly and practical scheme for citably identifying information in a distributed environment. The Framework is currently used to manage neuroscience Magnetic Resonance and microscopy imaging data sets in both clinical and basic neuroscience research environments. The Framework facilitates multi-disciplinary and collaborative subject-based research, and extends earlier object models used in the research imaging domain. Whilst the Framework has been explicitly validated for neuroimaging research applications, it has broader application to other fields of subject-centric research.
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spelling pubmed-27152662009-07-27 An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications Lohrey, Jason M. Killeen, Neil E.B. Egan, Gary F. Front Neuroinformatics Neuroscience A framework that integrates an object model, research methods (workflows), the capture of experimental data sets and the provenance of those data sets for subject-centric research is presented. The design of the Framework object model draws on and extends pre-existing object models in the public domain. In particular the Framework tracks the state and life cycle of a subject during an experimental method, provides for reusable subjects, primary, derived and recursive data sets of arbitrary content types, and defines a user-friendly and practical scheme for citably identifying information in a distributed environment. The Framework is currently used to manage neuroscience Magnetic Resonance and microscopy imaging data sets in both clinical and basic neuroscience research environments. The Framework facilitates multi-disciplinary and collaborative subject-based research, and extends earlier object models used in the research imaging domain. Whilst the Framework has been explicitly validated for neuroimaging research applications, it has broader application to other fields of subject-centric research. Frontiers Research Foundation 2009-07-08 /pmc/articles/PMC2715266/ /pubmed/19636389 http://dx.doi.org/10.3389/neuro.11.019.2009 Text en Copyright © 2009 Lohrey, Killeen and Egan. http://www.frontiersin.org/licenseagreement This is an open-access article subject to an exclusive license agreement between the authors and the Frontiers Research Foundation, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
spellingShingle Neuroscience
Lohrey, Jason M.
Killeen, Neil E.B.
Egan, Gary F.
An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications
title An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications
title_full An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications
title_fullStr An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications
title_full_unstemmed An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications
title_short An Integrated Object Model and Method Framework for Subject-Centric e-Research Applications
title_sort integrated object model and method framework for subject-centric e-research applications
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2715266/
https://www.ncbi.nlm.nih.gov/pubmed/19636389
http://dx.doi.org/10.3389/neuro.11.019.2009
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