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Spiking neural network simulation: numerical integration with the Parker-Sochacki method

Mathematical neuronal models are normally expressed using differential equations. The Parker-Sochacki method is a new technique for the numerical integration of differential equations applicable to many neuronal models. Using this method, the solution order can be adapted according to the local cond...

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Detalles Bibliográficos
Autores principales: Stewart, Robert D., Bair, Wyeth
Formato: Texto
Lenguaje:English
Publicado: Springer US 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2717378/
https://www.ncbi.nlm.nih.gov/pubmed/19151930
http://dx.doi.org/10.1007/s10827-008-0131-5
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author Stewart, Robert D.
Bair, Wyeth
author_facet Stewart, Robert D.
Bair, Wyeth
author_sort Stewart, Robert D.
collection PubMed
description Mathematical neuronal models are normally expressed using differential equations. The Parker-Sochacki method is a new technique for the numerical integration of differential equations applicable to many neuronal models. Using this method, the solution order can be adapted according to the local conditions at each time step, enabling adaptive error control without changing the integration timestep. The method has been limited to polynomial equations, but we present division and power operations that expand its scope. We apply the Parker-Sochacki method to the Izhikevich ‘simple’ model and a Hodgkin-Huxley type neuron, comparing the results with those obtained using the Runge-Kutta and Bulirsch-Stoer methods. Benchmark simulations demonstrate an improved speed/accuracy trade-off for the method relative to these established techniques.
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spelling pubmed-27173782009-07-29 Spiking neural network simulation: numerical integration with the Parker-Sochacki method Stewart, Robert D. Bair, Wyeth J Comput Neurosci Article Mathematical neuronal models are normally expressed using differential equations. The Parker-Sochacki method is a new technique for the numerical integration of differential equations applicable to many neuronal models. Using this method, the solution order can be adapted according to the local conditions at each time step, enabling adaptive error control without changing the integration timestep. The method has been limited to polynomial equations, but we present division and power operations that expand its scope. We apply the Parker-Sochacki method to the Izhikevich ‘simple’ model and a Hodgkin-Huxley type neuron, comparing the results with those obtained using the Runge-Kutta and Bulirsch-Stoer methods. Benchmark simulations demonstrate an improved speed/accuracy trade-off for the method relative to these established techniques. Springer US 2009-01-17 2009-08 /pmc/articles/PMC2717378/ /pubmed/19151930 http://dx.doi.org/10.1007/s10827-008-0131-5 Text en © The Author(s) 2009
spellingShingle Article
Stewart, Robert D.
Bair, Wyeth
Spiking neural network simulation: numerical integration with the Parker-Sochacki method
title Spiking neural network simulation: numerical integration with the Parker-Sochacki method
title_full Spiking neural network simulation: numerical integration with the Parker-Sochacki method
title_fullStr Spiking neural network simulation: numerical integration with the Parker-Sochacki method
title_full_unstemmed Spiking neural network simulation: numerical integration with the Parker-Sochacki method
title_short Spiking neural network simulation: numerical integration with the Parker-Sochacki method
title_sort spiking neural network simulation: numerical integration with the parker-sochacki method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2717378/
https://www.ncbi.nlm.nih.gov/pubmed/19151930
http://dx.doi.org/10.1007/s10827-008-0131-5
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